Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2565

Experiment: Ying_all64 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2563 and GFF2564 are separated by 207 nucleotidesGFF2564 and GFF2565 overlap by 4 nucleotidesGFF2565 and GFF2566 are separated by 21 nucleotides GFF2563 - hypothetical protein, at 152,010 to 152,600 GFF2563 GFF2564 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 152,808 to 153,347 GFF2564 GFF2565 - hypothetical protein, at 153,344 to 153,472 GFF2565 GFF2566 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 153,494 to 157,093 GFF2566 Position (kb) 153 154Strain fitness (log2 ratio) -1 0 1 2 3at 152.387 kb on - strand, within GFF2563at 152.645 kb on + strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.707 kb on + strandat 152.707 kb on + strandat 152.708 kb on - strandat 152.708 kb on - strandat 152.746 kb on - strandat 152.770 kb on - strandat 152.803 kb on + strandat 152.803 kb on + strandat 152.803 kb on + strandat 152.804 kb on - strandat 152.804 kb on - strandat 152.804 kb on - strandat 152.831 kb on + strandat 152.831 kb on + strandat 152.842 kb on - strandat 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.014 kb on - strand, within GFF2564at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.426 kb on - strand, within GFF2565at 153.557 kb on + strandat 153.558 kb on - strandat 153.558 kb on - strandat 153.678 kb on - strandat 153.701 kb on + strandat 153.701 kb on + strandat 153.701 kb on + strandat 153.702 kb on - strandat 153.702 kb on - strandat 153.731 kb on + strandat 153.732 kb on - strandat 153.866 kb on + strand, within GFF2566at 153.866 kb on + strand, within GFF2566at 153.867 kb on - strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.280 kb on + strand, within GFF2566at 154.281 kb on - strand, within GFF2566at 154.289 kb on + strand, within GFF2566at 154.289 kb on + strand, within GFF2566at 154.290 kb on - strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.304 kb on + strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.305 kb on - strand, within GFF2566at 154.306 kb on - strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.385 kb on + strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566at 154.386 kb on - strand, within GFF2566

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
remove
152,387 - GFF2563 0.64 -0.3
152,645 + -0.3
152,646 - -1.5
152,646 - -0.4
152,646 - -1.0
152,646 - +0.5
152,707 + +0.0
152,707 + -0.1
152,708 - +0.4
152,708 - +1.3
152,746 - +0.9
152,770 - -1.0
152,803 + +0.9
152,803 + +1.1
152,803 + +1.1
152,804 - -0.3
152,804 - +0.2
152,804 - +0.8
152,831 + +0.5
152,831 + -1.0
152,842 - +0.7
153,013 + GFF2564 0.38 +0.1
153,013 + GFF2564 0.38 -1.0
153,013 + GFF2564 0.38 +0.8
153,013 + GFF2564 0.38 +0.9
153,014 - GFF2564 0.38 -0.3
153,394 + GFF2565 0.39 +2.3
153,394 + GFF2565 0.39 -0.8
153,394 + GFF2565 0.39 +0.5
153,394 + GFF2565 0.39 -0.5
153,394 + GFF2565 0.39 +0.5
153,394 + GFF2565 0.39 -1.0
153,394 + GFF2565 0.39 -0.4
153,394 + GFF2565 0.39 +0.2
153,394 + GFF2565 0.39 -0.5
153,394 + GFF2565 0.39 -0.4
153,394 + GFF2565 0.39 +1.3
153,394 + GFF2565 0.39 -1.7
153,394 + GFF2565 0.39 +1.2
153,394 + GFF2565 0.39 -0.1
153,394 + GFF2565 0.39 -0.8
153,394 + GFF2565 0.39 -0.4
153,395 - GFF2565 0.40 -0.7
153,395 - GFF2565 0.40 -0.1
153,395 - GFF2565 0.40 +1.8
153,395 - GFF2565 0.40 +0.2
153,395 - GFF2565 0.40 +1.4
153,395 - GFF2565 0.40 +1.6
153,395 - GFF2565 0.40 -1.0
153,395 - GFF2565 0.40 +0.1
153,426 - GFF2565 0.64 +0.9
153,557 + +1.2
153,558 - +2.3
153,558 - +1.8
153,678 - +0.4
153,701 + +1.3
153,701 + +1.3
153,701 + +1.7
153,702 - +3.5
153,702 - -0.1
153,731 + +0.7
153,732 - +0.8
153,866 + GFF2566 0.10 +1.3
153,866 + GFF2566 0.10 +2.3
153,867 - GFF2566 0.10 +1.6
154,280 + GFF2566 0.22 +1.3
154,280 + GFF2566 0.22 +2.3
154,280 + GFF2566 0.22 +0.7
154,280 + GFF2566 0.22 +1.0
154,280 + GFF2566 0.22 +1.9
154,281 - GFF2566 0.22 +1.2
154,289 + GFF2566 0.22 +1.3
154,289 + GFF2566 0.22 +1.3
154,290 - GFF2566 0.22 +1.0
154,304 + GFF2566 0.23 +1.8
154,304 + GFF2566 0.23 +1.4
154,304 + GFF2566 0.23 +1.2
154,304 + GFF2566 0.23 +1.1
154,304 + GFF2566 0.23 +0.5
154,304 + GFF2566 0.23 +0.5
154,304 + GFF2566 0.23 +1.0
154,305 - GFF2566 0.23 +1.5
154,305 - GFF2566 0.23 +1.2
154,305 - GFF2566 0.23 +0.7
154,305 - GFF2566 0.23 +1.3
154,306 - GFF2566 0.23 +1.9
154,385 + GFF2566 0.25 +1.4
154,385 + GFF2566 0.25 +1.5
154,385 + GFF2566 0.25 +0.9
154,385 + GFF2566 0.25 +2.2
154,385 + GFF2566 0.25 +0.9
154,385 + GFF2566 0.25 +0.6
154,386 - GFF2566 0.25 +1.4
154,386 - GFF2566 0.25 +1.6
154,386 - GFF2566 0.25 +1.2
154,386 - GFF2566 0.25 +1.1
154,386 - GFF2566 0.25 +1.2

Or see this region's nucleotide sequence