Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2540 and GFF2541 are separated by 13 nucleotides GFF2541 and GFF2542 overlap by 4 nucleotides GFF2542 and GFF2543 overlap by 4 nucleotides GFF2543 and GFF2544 are separated by 17 nucleotides
GFF2540 - Tyrosine-protein kinase EpsD (EC 2.7.10.2), at 126,550 to 128,937
GFF2540
GFF2541 - GumB protein, at 128,951 to 129,688
GFF2541
GFF2542 - Colanic acid biosysnthesis glycosyl transferase WcaI, at 129,685 to 130,968
GFF2542
GFF2543 - hypothetical protein, at 130,965 to 131,846
GFF2543
GFF2544 - Beta 1,4 glucosyltransferase, at 131,864 to 132,847
GFF2544
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.718 kb on - strand at 128.789 kb on + strand at 128.876 kb on + strand at 128.909 kb on + strand at 129.099 kb on + strand, within GFF2541 at 129.166 kb on - strand, within GFF2541 at 129.229 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.331 kb on - strand, within GFF2541 at 129.331 kb on - strand, within GFF2541 at 130.547 kb on - strand, within GFF2542 at 130.548 kb on - strand, within GFF2542 at 130.910 kb on + strand at 130.911 kb on - strand at 130.953 kb on - strand at 130.953 kb on - strand at 131.083 kb on + strand, within GFF2543 at 131.083 kb on + strand, within GFF2543 at 131.084 kb on - strand, within GFF2543 at 131.117 kb on - strand, within GFF2543 at 131.117 kb on - strand, within GFF2543 at 131.117 kb on - strand, within GFF2543 at 131.185 kb on + strand, within GFF2543 at 131.186 kb on - strand, within GFF2543 at 131.186 kb on - strand, within GFF2543 at 131.263 kb on + strand, within GFF2543 at 131.263 kb on + strand, within GFF2543 at 131.264 kb on - strand, within GFF2543 at 131.264 kb on - strand, within GFF2543 at 131.272 kb on + strand, within GFF2543 at 131.355 kb on + strand, within GFF2543 at 131.377 kb on + strand, within GFF2543 at 131.378 kb on - strand, within GFF2543 at 131.587 kb on + strand, within GFF2543 at 131.588 kb on - strand, within GFF2543 at 131.617 kb on + strand, within GFF2543 at 131.629 kb on + strand, within GFF2543 at 131.629 kb on + strand, within GFF2543 at 131.630 kb on - strand, within GFF2543 at 131.633 kb on - strand, within GFF2543 at 131.633 kb on - strand, within GFF2543 at 131.633 kb on - strand, within GFF2543
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 128,718 - -0.7 128,789 + -0.4 128,876 + -0.5 128,909 + -0.1 129,099 + GFF2541 0.20 +0.3 129,166 - GFF2541 0.29 -1.0 129,229 - GFF2541 0.38 -0.9 129,319 - GFF2541 0.50 -0.7 129,319 - GFF2541 0.50 +1.0 129,319 - GFF2541 0.50 +1.8 129,319 - GFF2541 0.50 -2.3 129,331 - GFF2541 0.51 -0.3 129,331 - GFF2541 0.51 -0.5 130,547 - GFF2542 0.67 +0.2 130,548 - GFF2542 0.67 -1.1 130,910 + -0.8 130,911 - +0.5 130,953 - +0.2 130,953 - -1.5 131,083 + GFF2543 0.13 -1.1 131,083 + GFF2543 0.13 -2.1 131,084 - GFF2543 0.13 +0.6 131,117 - GFF2543 0.17 +0.1 131,117 - GFF2543 0.17 +0.9 131,117 - GFF2543 0.17 -1.1 131,185 + GFF2543 0.25 +2.2 131,186 - GFF2543 0.25 +0.1 131,186 - GFF2543 0.25 +0.5 131,263 + GFF2543 0.34 -1.1 131,263 + GFF2543 0.34 -0.5 131,264 - GFF2543 0.34 +0.0 131,264 - GFF2543 0.34 +0.9 131,272 + GFF2543 0.35 -1.5 131,355 + GFF2543 0.44 -1.0 131,377 + GFF2543 0.47 +0.5 131,378 - GFF2543 0.47 -0.4 131,587 + GFF2543 0.71 +0.6 131,588 - GFF2543 0.71 -1.6 131,617 + GFF2543 0.74 -1.3 131,629 + GFF2543 0.75 -0.7 131,629 + GFF2543 0.75 -0.0 131,630 - GFF2543 0.75 +0.2 131,633 - GFF2543 0.76 -0.9 131,633 - GFF2543 0.76 +0.2 131,633 - GFF2543 0.76 +0.4
Or see this region's nucleotide sequence