Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF22 and GFF23 are separated by 12 nucleotides GFF23 and GFF24 overlap by 4 nucleotides GFF24 and GFF25 are separated by 26 nucleotides
GFF22 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 20,306 to 21,064
GFF22
GFF23 - ABC transporter permease protein with unknown substrate, at 21,077 to 21,865
GFF23
GFF24 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 21,862 to 22,620
GFF24
GFF25 - putative monooxygenase, at 22,647 to 24,191
GFF25
Position (kb) 21
22
23 Strain fitness (log2 ratio) -1
0
1
2
3 at 21.192 kb on - strand, within GFF23 at 21.234 kb on - strand, within GFF23 at 21.234 kb on - strand, within GFF23 at 21.288 kb on - strand, within GFF23 at 21.408 kb on + strand, within GFF23 at 21.539 kb on + strand, within GFF23 at 21.786 kb on - strand, within GFF23 at 22.471 kb on + strand, within GFF24 at 22.471 kb on + strand, within GFF24 at 22.646 kb on + strand at 22.917 kb on + strand, within GFF25 at 22.918 kb on - strand, within GFF25 at 23.142 kb on + strand, within GFF25 at 23.143 kb on - strand, within GFF25 at 23.143 kb on - strand, within GFF25 at 23.193 kb on - strand, within GFF25 at 23.293 kb on - strand, within GFF25 at 23.472 kb on + strand, within GFF25 at 23.472 kb on + strand, within GFF25 at 23.472 kb on + strand, within GFF25 at 23.472 kb on + strand, within GFF25 at 23.472 kb on + strand, within GFF25 at 23.473 kb on - strand, within GFF25 at 23.520 kb on + strand, within GFF25 at 23.598 kb on + strand, within GFF25 at 23.599 kb on - strand, within GFF25 at 23.599 kb on - strand, within GFF25 at 23.619 kb on + strand, within GFF25 at 23.619 kb on + strand, within GFF25
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 21,192 - GFF23 0.15 +0.5 21,234 - GFF23 0.20 +0.4 21,234 - GFF23 0.20 +0.2 21,288 - GFF23 0.27 +0.2 21,408 + GFF23 0.42 +0.9 21,539 + GFF23 0.59 +0.2 21,786 - GFF23 0.90 +0.4 22,471 + GFF24 0.80 -0.2 22,471 + GFF24 0.80 +3.0 22,646 + -0.7 22,917 + GFF25 0.17 -1.0 22,918 - GFF25 0.18 +0.9 23,142 + GFF25 0.32 -1.0 23,143 - GFF25 0.32 -0.2 23,143 - GFF25 0.32 -0.5 23,193 - GFF25 0.35 +0.9 23,293 - GFF25 0.42 -0.6 23,472 + GFF25 0.53 -0.4 23,472 + GFF25 0.53 -0.2 23,472 + GFF25 0.53 +0.7 23,472 + GFF25 0.53 +1.2 23,472 + GFF25 0.53 +0.6 23,473 - GFF25 0.53 +0.4 23,520 + GFF25 0.57 +0.4 23,598 + GFF25 0.62 -0.3 23,599 - GFF25 0.62 -1.1 23,599 - GFF25 0.62 -0.6 23,619 + GFF25 0.63 -0.3 23,619 + GFF25 0.63 -0.2
Or see this region's nucleotide sequence