Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2368

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
7,699	-		GFF2367	0.24	-3.3
7,744	+		GFF2367	0.32	-4.2
7,745	-		GFF2367	0.33	-3.5
7,745	-		GFF2367	0.33	-2.5
7,806	+		GFF2367	0.43	-2.6
7,806	+		GFF2367	0.43	-2.4
7,806	+		GFF2367	0.43	-1.0
7,806	+		GFF2367	0.43	-3.9
8,021	+		GFF2367	0.82	-0.7
8,021	+		GFF2367	0.82	-1.3
8,232	+				-1.2
8,422	+				-0.3
8,437	+				+0.8
8,437	+				+0.1
8,437	+				-0.4
8,446	+				-1.0
8,446	+				+2.4
8,446	+				-0.9
8,446	+				-0.6
8,446	+				-1.0
8,446	+				-1.2
8,446	+				+2.9
8,446	-				+1.3
8,447	-				+0.3
8,447	-				-0.4
8,470	+				+1.7
8,470	+				-0.4
8,470	+				+3.4
8,470	+				-1.0
8,470	+				+1.0
8,470	+				-1.2
8,471	-				-0.0
8,471	-				-0.5
8,471	-				-0.7
8,472	-				-0.7
8,490	+				-0.3
8,515	+				-0.7
8,515	+				-0.4
8,518	+				-0.6
8,518	+				-0.3
8,518	+				-0.9
8,518	+				-0.7
8,519	-				-0.9
8,519	-				+0.1
8,519	-				+0.3
8,519	-				-1.0
8,633	+		GFF2368	0.21	+0.3
8,634	-		GFF2368	0.22	-0.0
8,634	-		GFF2368	0.22	-0.4
8,676	+		GFF2368	0.46	-0.9
8,782	+				+0.9
8,783	-				-1.4
8,783	-				-0.2
8,791	+				+0.5
8,791	+				+0.3
8,823	-				-0.3
9,203	+				-0.3
9,203	+				+0.4
9,203	+				+0.6
9,204	-				-0.5
9,204	-				+0.3
9,204	-				-0.4
9,330	+		GFF2369	0.15	+0.5
9,330	+		GFF2369	0.15	-1.2
9,330	+		GFF2369	0.15	-0.0
9,330	+		GFF2369	0.15	-0.9
9,331	-		GFF2369	0.15	+1.3
9,331	-		GFF2369	0.15	-0.2
9,331	-		GFF2369	0.15	+1.2
9,331	-		GFF2369	0.15	-0.1
9,552	+		GFF2369	0.30	-0.7