Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2281

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,165,578	+		GFF2279	0.56	+0.4
1,165,578	+		GFF2279	0.56	-0.7
1,165,578	+		GFF2279	0.56	-0.3
1,165,596	+		GFF2279	0.58	-1.5
1,165,596	+		GFF2279	0.58	-0.1
1,165,597	-		GFF2279	0.58	-0.1
1,165,597	-		GFF2279	0.58	-0.4
1,165,597	-		GFF2279	0.58	+2.2
1,165,752	+		GFF2279	0.76	-0.5
1,165,753	-		GFF2279	0.76	+1.0
1,165,842	+		GFF2279	0.86	+0.0
1,165,950	+				+1.2
1,165,951	-				+0.2
1,166,039	+				+0.8
1,166,039	+				-0.2
1,166,039	+				-1.2
1,166,039	+				-1.4
1,166,039	+				-0.9
1,166,039	+				+0.7
1,166,040	-				+0.4
1,166,040	-				-0.5
1,166,040	-				+0.2
1,166,040	-				-0.5
1,166,040	-				-0.2
1,166,040	-				+0.0
1,166,040	-				-0.5
1,166,129	+		GFF2280	0.23	+1.1
1,166,130	-		GFF2280	0.23	+0.8
1,166,130	-		GFF2280	0.23	-0.8
1,166,162	+		GFF2280	0.31	-0.1
1,166,162	+		GFF2280	0.31	+1.0
1,166,162	+		GFF2280	0.31	+2.7
1,166,163	-		GFF2280	0.31	-0.3
1,166,163	-		GFF2280	0.31	-0.2
1,166,163	-		GFF2280	0.31	-2.3
1,166,273	+		GFF2280	0.58	-1.1
1,166,273	+		GFF2280	0.58	-0.2
1,166,273	+		GFF2280	0.58	+0.0
1,166,273	+		GFF2280	0.58	+0.5
1,166,274	-		GFF2280	0.58	+0.6
1,166,274	-		GFF2280	0.58	+0.7
1,166,274	-		GFF2280	0.58	+1.4
1,166,331	-		GFF2280	0.72	-0.9
1,166,331	-		GFF2280	0.72	-0.9
1,166,331	-		GFF2280	0.72	-0.1
1,166,789	-		GFF2281	0.22	+0.1
1,166,789	-		GFF2281	0.22	+1.3
1,166,920	+		GFF2281	0.33	-0.2
1,167,052	+		GFF2281	0.43	+0.2
1,167,053	-		GFF2281	0.43	+1.0
1,167,053	-		GFF2281	0.43	-0.7
1,167,053	-		GFF2281	0.43	-0.0
1,167,328	+		GFF2281	0.65	+1.1
1,167,328	+		GFF2281	0.65	+0.8
1,167,328	+		GFF2281	0.65	-0.9
1,167,328	+		GFF2281	0.65	-0.6
1,167,329	-		GFF2281	0.65	+0.1
1,167,398	-		GFF2281	0.70	+0.6
1,167,398	-		GFF2281	0.70	-0.3
1,167,409	+		GFF2281	0.71	-0.4
1,167,673	+				+0.4
1,167,674	-				+0.4
1,167,674	-				+0.4
1,167,788	-				+0.1
1,168,031	-		GFF2282	0.25	-0.7
1,168,031	-		GFF2282	0.25	+0.6
1,168,204	+		GFF2282	0.42	+1.4
1,168,204	+		GFF2282	0.42	+2.4
1,168,204	+		GFF2282	0.42	+0.2
1,168,205	-		GFF2282	0.42	-0.6
1,168,205	-		GFF2282	0.42	-0.7
1,168,291	+		GFF2282	0.51	+0.2
1,168,292	-		GFF2282	0.51	-0.6
1,168,292	-		GFF2282	0.51	-2.0
1,168,292	-		GFF2282	0.51	-1.4
1,168,442	-		GFF2282	0.66	-0.6
1,168,442	-		GFF2282	0.66	+0.2
1,168,442	-		GFF2282	0.66	+1.4
1,168,467	-		GFF2282	0.68	+0.2
1,168,489	+		GFF2282	0.71	-0.5