Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF222 and GFF223 are separated by 49 nucleotides GFF223 and GFF224 are separated by 21 nucleotides GFF224 and GFF225 are separated by 13 nucleotides
GFF222 - ATP-dependent RNA helicase Bcep18194_A5658, at 243,279 to 244,769
GFF222
GFF223 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 244,819 to 245,643
GFF223
GFF224 - Magnesium and cobalt efflux protein CorC, at 245,665 to 246,984
GFF224
GFF225 - DinG family ATP-dependent helicase CPE1197, at 246,998 to 249,274
GFF225
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.194 kb on + strand, within GFF223 at 245.195 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.558 kb on + strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.645 kb on + strand at 245.645 kb on + strand at 245.646 kb on + strand at 245.646 kb on - strand at 245.646 kb on - strand at 245.646 kb on - strand at 245.664 kb on + strand at 246.005 kb on + strand, within GFF224 at 246.005 kb on + strand, within GFF224 at 246.006 kb on - strand, within GFF224 at 246.601 kb on + strand, within GFF224 at 246.601 kb on + strand, within GFF224 at 246.799 kb on + strand, within GFF224 at 246.800 kb on - strand, within GFF224 at 246.800 kb on - strand, within GFF224 at 247.143 kb on + strand at 247.143 kb on + strand at 247.143 kb on + strand at 247.149 kb on + strand at 247.149 kb on + strand at 247.150 kb on - strand at 247.156 kb on - strand at 247.440 kb on + strand, within GFF225 at 247.441 kb on - strand, within GFF225 at 247.467 kb on + strand, within GFF225 at 247.468 kb on - strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.654 kb on - strand, within GFF225 at 247.654 kb on - strand, within GFF225
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 245,194 + GFF223 0.45 -0.5 245,195 + GFF223 0.46 +0.3 245,305 + GFF223 0.59 -0.7 245,305 + GFF223 0.59 -0.1 245,305 + GFF223 0.59 +0.4 245,306 - GFF223 0.59 -0.2 245,306 - GFF223 0.59 +0.4 245,306 - GFF223 0.59 +1.1 245,306 - GFF223 0.59 -0.3 245,306 - GFF223 0.59 +0.0 245,306 - GFF223 0.59 +0.0 245,558 + GFF223 0.90 +0.6 245,559 - GFF223 0.90 -0.2 245,559 - GFF223 0.90 -0.6 245,559 - GFF223 0.90 -0.4 245,559 - GFF223 0.90 +2.1 245,645 + -2.2 245,645 + -0.1 245,646 + -0.1 245,646 - +0.2 245,646 - -0.2 245,646 - -0.1 245,664 + +1.4 246,005 + GFF224 0.26 -0.4 246,005 + GFF224 0.26 -1.0 246,006 - GFF224 0.26 +1.1 246,601 + GFF224 0.71 +0.1 246,601 + GFF224 0.71 -0.7 246,799 + GFF224 0.86 +0.1 246,800 - GFF224 0.86 +0.9 246,800 - GFF224 0.86 -0.6 247,143 + +0.5 247,143 + +0.0 247,143 + -1.0 247,149 + -0.6 247,149 + -0.6 247,150 - -0.6 247,156 - -0.6 247,440 + GFF225 0.19 +0.5 247,441 - GFF225 0.19 -1.4 247,467 + GFF225 0.21 +0.2 247,468 - GFF225 0.21 +0.8 247,653 + GFF225 0.29 -0.1 247,653 + GFF225 0.29 -0.2 247,653 + GFF225 0.29 -0.2 247,653 + GFF225 0.29 -1.3 247,654 - GFF225 0.29 -0.2 247,654 - GFF225 0.29 -0.3
Or see this region's nucleotide sequence