Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2233

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,119,032	+				-0.2
1,119,125	+				-0.6
1,119,245	+				-0.9
1,119,245	+				-0.6
1,119,246	-				+1.9
1,119,246	-				+0.4
1,119,269	+				+0.4
1,119,291	+				-2.0
1,119,291	+				+0.3
1,119,291	+				+0.4
1,119,292	-				-0.8
1,119,292	-				+0.1
1,119,292	-				-0.1
1,119,297	+				-0.6
1,119,298	-				+0.8
1,119,311	-				+0.8
1,119,314	+				+0.8
1,119,315	-				-2.1
1,119,341	+				+1.6
1,119,425	+				-0.9
1,119,425	+				-0.1
1,119,528	-				-0.8
1,119,528	-				+1.9
1,119,574	-				+0.3
1,119,610	+				+1.1
1,119,622	-				-0.7
1,119,623	+				-0.5
1,119,640	+				+0.4
1,119,671	+				+0.1
1,119,672	-				-0.4
1,119,672	-				+0.4
1,119,702	-				-0.5
1,119,741	+				+0.4
1,119,891	+		GFF2233	0.15	+4.9
1,119,891	+		GFF2233	0.15	+0.2
1,119,937	+		GFF2233	0.49	+0.2
1,120,013	-				+1.0
1,120,013	-				+0.1
1,120,013	-				-0.2
1,120,217	-				+0.4
1,120,265	+				-0.1
1,120,281	-				+0.5
1,120,357	-				+1.0
1,120,361	-				+0.1
1,120,555	+				-0.4
1,120,555	+				-0.3
1,120,555	+				-0.5
1,120,555	+				-0.0
1,120,555	+				+0.7
1,120,555	+				+0.5
1,120,555	+				+0.8
1,120,556	-				+0.6
1,120,556	-				-0.5
1,120,556	-				-0.8
1,120,556	-				-0.0
1,120,574	+				+1.2
1,120,574	+				-0.4
1,120,574	+				+0.2
1,120,574	+				+0.3
1,120,574	+				-0.3
1,120,575	-				-0.2
1,120,575	-				-0.3
1,120,575	-				-0.7
1,120,575	-				-1.8
1,120,603	+				+0.6
1,120,603	+				+1.1
1,120,603	+				+0.6
1,120,603	+				+1.0
1,120,603	+				+1.9
1,120,603	+				+2.5
1,120,603	+				-0.5
1,120,603	+				-0.6
1,120,604	-				-0.2
1,120,604	-				-1.3
1,120,604	-				-0.9
1,120,604	-				-0.2
1,120,604	-				-0.7
1,120,604	-				+3.8
1,120,617	+				+1.4
1,120,617	+				-1.9
1,120,617	+				-0.2
1,120,618	-				-1.8
1,120,618	-				-0.9
1,120,618	-				+0.6
1,120,619	+				+1.4
1,120,619	+				-0.1
1,120,619	+				-0.5
1,120,619	+				+0.0
1,120,619	+				+0.8
1,120,619	+				+0.8
1,120,619	+				-1.2
1,120,619	+				-0.8
1,120,619	+				-0.4
1,120,619	+				+0.8
1,120,619	+				-0.1
1,120,619	+				+0.4
1,120,619	+				+0.7
1,120,619	+				+0.4
1,120,619	+				-0.3
1,120,619	+				-0.6
1,120,619	+				-1.3
1,120,619	+				+0.7
1,120,619	+				-0.4
1,120,619	+				+0.7
1,120,620	-				+1.2
1,120,620	-				-0.2
1,120,620	-				-1.6
1,120,620	-				-0.2
1,120,620	-				+1.9
1,120,620	-				+0.1
1,120,620	-				+0.4
1,120,620	-				-0.3
1,120,620	-				-0.3
1,120,620	-				-0.5
1,120,620	-				+2.2
1,120,633	+				-0.2
1,120,634	-				-1.6
1,120,674	+				-0.9
1,120,674	+				-0.4
1,120,674	+				+0.6
1,120,674	+				-0.1
1,120,674	+				-0.2
1,120,674	+				-0.0
1,120,674	+				-0.3
1,120,675	-				+0.2
1,120,675	-				-0.1
1,120,675	-				-0.3
1,120,675	-				-0.0
1,120,675	-				-0.4
1,120,675	-				+0.0
1,120,675	-				+0.3
1,120,675	-				+0.1
1,120,675	-				+1.0
1,120,686	-				-2.4
1,120,686	-				-1.2
1,120,686	-				+0.4
1,120,711	+				+0.7
1,120,712	-				-0.0
1,120,778	+				+0.7
1,120,778	+				-0.3
1,120,778	+				+1.4
1,120,778	+				+0.5
1,120,778	+				+0.4
1,120,778	+				-0.6
1,120,778	+				+0.5
1,120,778	+				+0.7
1,120,778	+				-0.5
1,120,778	+				+0.8
1,120,778	+				+1.0
1,120,778	+				-0.1
1,120,779	-				+0.3
1,120,779	-				+0.1
1,120,779	-				-0.4
1,120,779	-				-0.2
1,120,779	-				+0.8
1,120,779	-				+0.6
1,120,779	-				-1.2
1,120,779	-				-0.5
1,120,779	-				-1.8
1,120,779	-				-0.7
1,120,779	-				-1.5
1,120,790	+				-0.3
1,120,837	+				+0.1
1,120,837	+				-0.4
1,120,837	+				-0.4
1,120,838	-				+1.7
1,120,838	-				+0.0
1,120,947	+				-0.7
1,120,947	+				+0.8
1,120,947	+				-0.5
1,120,947	+				-2.3
1,120,947	+				+1.9
1,120,947	+				+2.0
1,120,947	+				-1.8
1,120,947	+				-0.4
1,120,947	+				+0.1
1,120,948	-				-0.0