Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2049 and GFF2050 are separated by 118 nucleotides GFF2050 and GFF2051 are separated by 4 nucleotides GFF2051 and GFF2052 are separated by 68 nucleotides
GFF2049 - Permeases of the major facilitator superfamily, at 931,043 to 932,263
GFF2049
GFF2050 - Aminotransferase class-III, at 932,382 to 933,737
GFF2050
GFF2051 - Hemerythrin HHE cation binding region, at 933,742 to 934,338
GFF2051
GFF2052 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 934,407 to 936,743
GFF2052
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 931.458 kb on + strand, within GFF2049 at 931.459 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.469 kb on - strand, within GFF2049 at 931.524 kb on + strand, within GFF2049 at 931.524 kb on + strand, within GFF2049 at 931.525 kb on - strand, within GFF2049 at 931.533 kb on + strand, within GFF2049 at 931.534 kb on - strand, within GFF2049 at 931.534 kb on - strand, within GFF2049 at 931.534 kb on - strand, within GFF2049 at 931.804 kb on - strand, within GFF2049 at 931.804 kb on - strand, within GFF2049 at 931.806 kb on + strand, within GFF2049 at 931.806 kb on + strand, within GFF2049 at 931.806 kb on + strand, within GFF2049 at 931.807 kb on - strand, within GFF2049 at 931.807 kb on - strand, within GFF2049 at 931.807 kb on - strand, within GFF2049 at 932.055 kb on + strand, within GFF2049 at 932.055 kb on + strand, within GFF2049 at 932.097 kb on + strand, within GFF2049 at 932.097 kb on + strand, within GFF2049 at 932.097 kb on + strand, within GFF2049 at 932.098 kb on - strand, within GFF2049 at 932.098 kb on - strand, within GFF2049 at 932.098 kb on - strand, within GFF2049 at 932.098 kb on - strand, within GFF2049 at 932.208 kb on + strand at 932.209 kb on - strand at 932.209 kb on - strand at 932.370 kb on + strand at 932.487 kb on + strand at 932.487 kb on + strand at 932.488 kb on - strand at 932.488 kb on - strand at 932.488 kb on - strand at 932.862 kb on + strand, within GFF2050 at 932.862 kb on + strand, within GFF2050 at 933.180 kb on + strand, within GFF2050 at 933.181 kb on - strand, within GFF2050 at 933.181 kb on - strand, within GFF2050 at 933.411 kb on + strand, within GFF2050 at 933.412 kb on - strand, within GFF2050 at 933.412 kb on - strand, within GFF2050 at 933.950 kb on + strand, within GFF2051 at 933.950 kb on + strand, within GFF2051 at 933.951 kb on - strand, within GFF2051 at 933.951 kb on - strand, within GFF2051 at 933.951 kb on - strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.184 kb on + strand, within GFF2051 at 934.185 kb on - strand, within GFF2051 at 934.185 kb on - strand, within GFF2051
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 931,458 + GFF2049 0.34 -0.5 931,459 - GFF2049 0.34 -1.0 931,469 - GFF2049 0.35 +0.5 931,469 - GFF2049 0.35 -1.0 931,469 - GFF2049 0.35 +1.4 931,469 - GFF2049 0.35 +0.2 931,469 - GFF2049 0.35 -0.5 931,469 - GFF2049 0.35 -0.5 931,469 - GFF2049 0.35 -0.6 931,524 + GFF2049 0.39 -0.4 931,524 + GFF2049 0.39 -1.1 931,525 - GFF2049 0.39 -0.0 931,533 + GFF2049 0.40 -1.2 931,534 - GFF2049 0.40 -0.5 931,534 - GFF2049 0.40 -0.7 931,534 - GFF2049 0.40 -0.8 931,804 - GFF2049 0.62 -1.0 931,804 - GFF2049 0.62 +0.8 931,806 + GFF2049 0.62 -0.4 931,806 + GFF2049 0.62 -0.7 931,806 + GFF2049 0.62 -1.0 931,807 - GFF2049 0.63 -1.1 931,807 - GFF2049 0.63 -0.8 931,807 - GFF2049 0.63 +0.1 932,055 + GFF2049 0.83 -0.6 932,055 + GFF2049 0.83 -1.3 932,097 + GFF2049 0.86 -0.3 932,097 + GFF2049 0.86 +0.0 932,097 + GFF2049 0.86 +0.9 932,098 - GFF2049 0.86 +1.1 932,098 - GFF2049 0.86 +0.6 932,098 - GFF2049 0.86 +2.0 932,098 - GFF2049 0.86 -0.3 932,208 + -0.2 932,209 - -0.5 932,209 - -0.3 932,370 + -0.2 932,487 + -1.1 932,487 + -0.1 932,488 - -1.1 932,488 - -0.7 932,488 - -0.6 932,862 + GFF2050 0.35 -1.4 932,862 + GFF2050 0.35 -0.1 933,180 + GFF2050 0.59 -0.6 933,181 - GFF2050 0.59 -0.9 933,181 - GFF2050 0.59 -3.0 933,411 + GFF2050 0.76 -0.4 933,412 - GFF2050 0.76 -0.6 933,412 - GFF2050 0.76 -1.0 933,950 + GFF2051 0.35 -0.6 933,950 + GFF2051 0.35 +1.7 933,951 - GFF2051 0.35 -0.3 933,951 - GFF2051 0.35 -0.9 933,951 - GFF2051 0.35 +0.1 934,184 + GFF2051 0.74 +0.0 934,184 + GFF2051 0.74 -1.0 934,184 + GFF2051 0.74 -0.8 934,184 + GFF2051 0.74 +0.2 934,185 - GFF2051 0.74 +0.5 934,185 - GFF2051 0.74 +0.4
Or see this region's nucleotide sequence