Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2041

Experiment: Ying_all64 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2040 and GFF2041 overlap by 4 nucleotidesGFF2041 and GFF2042 are separated by 172 nucleotidesGFF2042 and GFF2043 overlap by 28 nucleotides GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212 GFF2040 GFF2041 - hypothetical protein, at 922,209 to 922,700 GFF2041 GFF2042 - hypothetical protein, at 922,873 to 922,992 GFF2042 GFF2043 - Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster, at 922,965 to 924,266 GFF2043 Position (kb) 922 923Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 921.209 kb on - strand, within GFF2040at 921.257 kb on - strand, within GFF2040at 921.257 kb on - strand, within GFF2040at 921.391 kb on + strand, within GFF2040at 921.392 kb on - strand, within GFF2040at 921.508 kb on + strand, within GFF2040at 921.508 kb on + strand, within GFF2040at 921.509 kb on - strand, within GFF2040at 921.509 kb on - strand, within GFF2040at 921.619 kb on + strand, within GFF2040at 921.619 kb on + strand, within GFF2040at 921.620 kb on - strand, within GFF2040at 921.620 kb on - strand, within GFF2040at 921.620 kb on - strand, within GFF2040at 921.632 kb on - strand, within GFF2040at 921.632 kb on - strand, within GFF2040at 921.695 kb on - strand, within GFF2040at 921.722 kb on - strand, within GFF2040at 921.790 kb on + strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.892 kb on + strand, within GFF2040at 921.893 kb on - strand, within GFF2040at 921.894 kb on - strand, within GFF2040at 922.084 kb on + strandat 922.085 kb on - strandat 922.351 kb on - strand, within GFF2041at 922.537 kb on - strand, within GFF2041at 922.698 kb on + strandat 922.698 kb on + strandat 922.699 kb on - strandat 922.699 kb on - strandat 922.699 kb on - strandat 922.966 kb on + strandat 922.966 kb on + strandat 922.966 kb on + strandat 922.966 kb on + strandat 923.065 kb on + strandat 923.065 kb on + strandat 923.065 kb on + strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.164 kb on + strand, within GFF2043at 923.165 kb on - strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.329 kb on + strand, within GFF2043at 923.329 kb on + strand, within GFF2043at 923.330 kb on - strand, within GFF2043at 923.330 kb on - strand, within GFF2043at 923.330 kb on - strand, within GFF2043at 923.380 kb on + strand, within GFF2043at 923.381 kb on - strand, within GFF2043at 923.381 kb on - strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.473 kb on + strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.474 kb on - strand, within GFF2043at 923.527 kb on + strand, within GFF2043at 923.693 kb on - strand, within GFF2043

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
remove
921,209 - GFF2040 0.33 +1.6
921,257 - GFF2040 0.36 +1.2
921,257 - GFF2040 0.36 +1.4
921,391 + GFF2040 0.45 +2.1
921,392 - GFF2040 0.45 +1.5
921,508 + GFF2040 0.53 +1.8
921,508 + GFF2040 0.53 +1.3
921,509 - GFF2040 0.53 +1.7
921,509 - GFF2040 0.53 +2.4
921,619 + GFF2040 0.60 +0.7
921,619 + GFF2040 0.60 +1.6
921,620 - GFF2040 0.60 +1.8
921,620 - GFF2040 0.60 +2.0
921,620 - GFF2040 0.60 +1.7
921,632 - GFF2040 0.61 +2.0
921,632 - GFF2040 0.61 +1.8
921,695 - GFF2040 0.65 +1.7
921,722 - GFF2040 0.67 +2.1
921,790 + GFF2040 0.72 +1.6
921,791 - GFF2040 0.72 +2.8
921,791 - GFF2040 0.72 +1.8
921,791 - GFF2040 0.72 +1.4
921,791 - GFF2040 0.72 +2.1
921,791 - GFF2040 0.72 +2.4
921,892 + GFF2040 0.79 +1.5
921,893 - GFF2040 0.79 +2.1
921,894 - GFF2040 0.79 +0.9
922,084 + +1.3
922,085 - +1.9
922,351 - GFF2041 0.29 -0.7
922,537 - GFF2041 0.67 +1.4
922,698 + -2.0
922,698 + +1.4
922,699 - +1.6
922,699 - -0.7
922,699 - +1.4
922,966 + -0.4
922,966 + -0.2
922,966 + -0.4
922,966 + -0.3
923,065 + +3.2
923,065 + +3.3
923,065 + +2.9
923,066 - +2.8
923,066 - +2.9
923,066 - +3.4
923,066 - +3.8
923,066 - +3.1
923,164 + GFF2043 0.15 +2.6
923,165 - GFF2043 0.15 +2.8
923,167 + GFF2043 0.16 +3.2
923,167 + GFF2043 0.16 +4.0
923,167 + GFF2043 0.16 +2.7
923,167 + GFF2043 0.16 +3.0
923,167 + GFF2043 0.16 +2.2
923,167 + GFF2043 0.16 +2.2
923,168 - GFF2043 0.16 +3.5
923,168 - GFF2043 0.16 +3.2
923,168 - GFF2043 0.16 +3.6
923,168 - GFF2043 0.16 +3.1
923,329 + GFF2043 0.28 +2.9
923,329 + GFF2043 0.28 +2.9
923,330 - GFF2043 0.28 +3.2
923,330 - GFF2043 0.28 +2.6
923,330 - GFF2043 0.28 +2.6
923,380 + GFF2043 0.32 +3.4
923,381 - GFF2043 0.32 +2.9
923,381 - GFF2043 0.32 +2.3
923,473 + GFF2043 0.39 +3.0
923,473 + GFF2043 0.39 +4.5
923,473 + GFF2043 0.39 +2.5
923,473 + GFF2043 0.39 +3.0
923,473 + GFF2043 0.39 +3.1
923,473 + GFF2043 0.39 +4.6
923,473 + GFF2043 0.39 +2.5
923,474 - GFF2043 0.39 +3.4
923,474 - GFF2043 0.39 +2.9
923,474 - GFF2043 0.39 +2.5
923,474 - GFF2043 0.39 +3.6
923,474 - GFF2043 0.39 +3.4
923,474 - GFF2043 0.39 +2.9
923,474 - GFF2043 0.39 +3.7
923,474 - GFF2043 0.39 +3.5
923,474 - GFF2043 0.39 +4.1
923,527 + GFF2043 0.43 +3.7
923,693 - GFF2043 0.56 +2.3

Or see this region's nucleotide sequence