Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2013 and GFF2014 are separated by 20 nucleotides GFF2014 and GFF2015 are separated by 6 nucleotides GFF2015 and GFF2016 are separated by 11 nucleotides
GFF2013 - Chromosome (plasmid) partitioning protein ParB, at 889,193 to 890,119
GFF2013
GFF2014 - FIG00932469: hypothetical protein, at 890,140 to 890,688
GFF2014
GFF2015 - Chromosome (plasmid) partitioning protein ParA, at 890,695 to 891,465
GFF2015
GFF2016 - Threonine efflux protein, at 891,477 to 892,091
GFF2016
Position (kb) 890
891 Strain fitness (log2 ratio) -1
0
1
2 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 891.478 kb on + strand at 891.478 kb on + strand at 891.478 kb on + strand at 891.478 kb on + strand at 891.478 kb on + strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.479 kb on - strand at 891.613 kb on + strand, within GFF2016 at 891.613 kb on + strand, within GFF2016 at 891.613 kb on + strand, within GFF2016 at 891.613 kb on + strand, within GFF2016 at 891.614 kb on - strand, within GFF2016 at 891.614 kb on - strand, within GFF2016 at 891.614 kb on - strand, within GFF2016 at 891.614 kb on - strand, within GFF2016
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 890,288 + GFF2014 0.27 -0.4 890,288 + GFF2014 0.27 -0.6 890,288 + GFF2014 0.27 -1.1 890,288 + GFF2014 0.27 +2.1 890,288 + GFF2014 0.27 -0.3 890,288 + GFF2014 0.27 +0.5 890,288 + GFF2014 0.27 +1.9 890,289 - GFF2014 0.27 -0.5 890,289 - GFF2014 0.27 -0.8 890,289 - GFF2014 0.27 -0.7 890,289 - GFF2014 0.27 -0.6 890,289 - GFF2014 0.27 -0.3 890,289 - GFF2014 0.27 -0.7 891,478 + -0.4 891,478 + -0.8 891,478 + -1.2 891,478 + +1.0 891,478 + +0.5 891,479 - +0.2 891,479 - -0.6 891,479 - +0.3 891,479 - +0.1 891,479 - +1.2 891,479 - +0.2 891,479 - -0.4 891,479 - +2.1 891,479 - +0.8 891,613 + GFF2016 0.22 -0.5 891,613 + GFF2016 0.22 +0.4 891,613 + GFF2016 0.22 -0.4 891,613 + GFF2016 0.22 +0.6 891,614 - GFF2016 0.22 -0.8 891,614 - GFF2016 0.22 -0.0 891,614 - GFF2016 0.22 +0.0 891,614 - GFF2016 0.22 -0.5
Or see this region's nucleotide sequence