Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1982 and GFF1983 are separated by 86 nucleotides GFF1983 and GFF1984 are separated by 45 nucleotides GFF1984 and GFF1985 are separated by 263 nucleotides GFF1985 and GFF1986 are separated by 30 nucleotides
GFF1982 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 857,567 to 858,088
GFF1982
GFF1983 - Transcriptional regulator, MarR family, at 858,175 to 858,606
GFF1983
GFF1984 - Permease of the drug/metabolite transporter (DMT) superfamily, at 858,652 to 859,557
GFF1984
GFF1985 - hypothetical protein, at 859,821 to 860,096
GFF1985
GFF1986 - hypothetical protein, at 860,127 to 864,020
GFF1986
Position (kb) 858
859
860 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 857.686 kb on + strand, within GFF1982 at 857.687 kb on - strand, within GFF1982 at 857.810 kb on + strand, within GFF1982 at 857.810 kb on + strand, within GFF1982 at 857.811 kb on - strand, within GFF1982 at 857.811 kb on - strand, within GFF1982 at 857.972 kb on + strand, within GFF1982 at 857.972 kb on + strand, within GFF1982 at 857.973 kb on - strand, within GFF1982 at 858.068 kb on + strand at 858.208 kb on + strand at 858.208 kb on + strand at 858.208 kb on + strand at 858.209 kb on - strand at 858.209 kb on - strand at 858.209 kb on - strand at 858.217 kb on + strand at 858.218 kb on - strand at 858.218 kb on - strand at 858.218 kb on - strand at 858.494 kb on + strand, within GFF1983 at 858.494 kb on + strand, within GFF1983 at 858.604 kb on + strand at 858.928 kb on + strand, within GFF1984 at 858.928 kb on + strand, within GFF1984 at 858.928 kb on + strand, within GFF1984 at 858.928 kb on + strand, within GFF1984 at 858.929 kb on + strand, within GFF1984 at 858.929 kb on - strand, within GFF1984 at 858.929 kb on - strand, within GFF1984 at 858.929 kb on - strand, within GFF1984 at 858.976 kb on + strand, within GFF1984 at 858.976 kb on + strand, within GFF1984 at 858.976 kb on + strand, within GFF1984 at 859.240 kb on + strand, within GFF1984 at 859.240 kb on + strand, within GFF1984 at 859.241 kb on - strand, within GFF1984 at 859.372 kb on + strand, within GFF1984 at 859.372 kb on + strand, within GFF1984 at 859.373 kb on - strand, within GFF1984 at 859.373 kb on - strand, within GFF1984 at 859.373 kb on - strand, within GFF1984 at 859.373 kb on - strand, within GFF1984 at 859.373 kb on - strand, within GFF1984 at 859.373 kb on - strand, within GFF1984 at 859.403 kb on + strand, within GFF1984 at 859.403 kb on - strand, within GFF1984 at 859.638 kb on + strand at 859.638 kb on + strand at 859.638 kb on + strand at 859.638 kb on + strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.639 kb on - strand at 859.642 kb on + strand at 859.642 kb on + strand at 859.642 kb on + strand at 859.643 kb on - strand at 859.643 kb on - strand at 859.643 kb on - strand at 860.013 kb on + strand, within GFF1985 at 860.014 kb on - strand, within GFF1985 at 860.058 kb on + strand, within GFF1985 at 860.115 kb on + strand at 860.115 kb on + strand at 860.115 kb on + strand at 860.116 kb on - strand at 860.230 kb on - strand at 860.230 kb on - strand at 860.230 kb on - strand at 860.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 857,686 + GFF1982 0.23 +0.2 857,687 - GFF1982 0.23 +4.4 857,810 + GFF1982 0.47 -0.1 857,810 + GFF1982 0.47 -0.6 857,811 - GFF1982 0.47 -0.8 857,811 - GFF1982 0.47 -0.3 857,972 + GFF1982 0.78 +3.1 857,972 + GFF1982 0.78 -0.6 857,973 - GFF1982 0.78 -0.6 858,068 + +0.4 858,208 + +0.1 858,208 + +0.5 858,208 + +0.8 858,209 - +0.5 858,209 - +1.1 858,209 - +0.4 858,217 + +0.6 858,218 - +0.6 858,218 - -0.6 858,218 - +0.3 858,494 + GFF1983 0.74 +1.1 858,494 + GFF1983 0.74 +1.0 858,604 + -0.2 858,928 + GFF1984 0.30 -0.0 858,928 + GFF1984 0.30 -0.3 858,928 + GFF1984 0.30 +0.8 858,928 + GFF1984 0.30 -0.3 858,929 + GFF1984 0.31 -1.4 858,929 - GFF1984 0.31 -0.9 858,929 - GFF1984 0.31 +0.8 858,929 - GFF1984 0.31 -0.6 858,976 + GFF1984 0.36 +0.1 858,976 + GFF1984 0.36 -0.1 858,976 + GFF1984 0.36 +2.0 859,240 + GFF1984 0.65 -1.1 859,240 + GFF1984 0.65 -0.9 859,241 - GFF1984 0.65 +0.1 859,372 + GFF1984 0.79 -1.3 859,372 + GFF1984 0.79 -1.1 859,373 - GFF1984 0.80 -0.9 859,373 - GFF1984 0.80 +0.4 859,373 - GFF1984 0.80 -0.1 859,373 - GFF1984 0.80 -1.2 859,373 - GFF1984 0.80 -0.4 859,373 - GFF1984 0.80 +1.0 859,403 + GFF1984 0.83 -1.2 859,403 - GFF1984 0.83 -0.2 859,638 + +1.7 859,638 + -0.6 859,638 + -1.2 859,638 + +0.4 859,639 - -0.3 859,639 - +0.8 859,639 - +1.4 859,639 - +0.7 859,639 - -0.1 859,639 - -0.6 859,639 - +0.2 859,639 - +0.5 859,639 - -1.0 859,642 + -0.2 859,642 + -0.8 859,642 + +2.5 859,643 - -0.0 859,643 - +3.8 859,643 - +0.1 860,013 + GFF1985 0.70 +0.4 860,014 - GFF1985 0.70 +0.2 860,058 + GFF1985 0.86 -0.4 860,115 + +1.7 860,115 + +0.3 860,115 + +3.4 860,116 - -0.5 860,230 - -0.5 860,230 - +4.0 860,230 - -0.8 860,380 - -0.7
Or see this region's nucleotide sequence