Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1979 and GFF1980 are separated by 21 nucleotides GFF1980 and GFF1981 overlap by 4 nucleotides
GFF1979 - Beta-lactamase class C and other penicillin binding proteins, at 854,374 to 855,615
GFF1979
GFF1980 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 855,637 to 856,431
GFF1980
GFF1981 - FIG00441354: hypothetical protein, at 856,428 to 857,543
GFF1981
Position (kb) 855
856
857 Strain fitness (log2 ratio) -1
0
1
2 at 854.643 kb on - strand, within GFF1979 at 854.666 kb on + strand, within GFF1979 at 854.666 kb on + strand, within GFF1979 at 854.889 kb on - strand, within GFF1979 at 854.889 kb on - strand, within GFF1979 at 855.128 kb on + strand, within GFF1979 at 855.128 kb on + strand, within GFF1979 at 855.128 kb on + strand, within GFF1979 at 855.128 kb on + strand, within GFF1979 at 855.128 kb on + strand, within GFF1979 at 855.128 kb on + strand, within GFF1979 at 855.129 kb on - strand, within GFF1979 at 855.129 kb on - strand, within GFF1979 at 855.252 kb on - strand, within GFF1979 at 855.323 kb on + strand, within GFF1979 at 855.323 kb on + strand, within GFF1979 at 855.324 kb on - strand, within GFF1979 at 855.324 kb on - strand, within GFF1979 at 855.338 kb on + strand, within GFF1979 at 855.476 kb on + strand, within GFF1979 at 855.893 kb on + strand, within GFF1980 at 856.259 kb on + strand, within GFF1980 at 856.259 kb on + strand, within GFF1980 at 856.259 kb on + strand, within GFF1980 at 856.260 kb on - strand, within GFF1980 at 856.286 kb on + strand, within GFF1980 at 856.484 kb on + strand at 856.555 kb on + strand, within GFF1981 at 856.556 kb on - strand, within GFF1981 at 856.561 kb on - strand, within GFF1981 at 856.675 kb on + strand, within GFF1981 at 856.676 kb on - strand, within GFF1981 at 856.676 kb on - strand, within GFF1981 at 856.795 kb on + strand, within GFF1981 at 857.101 kb on + strand, within GFF1981 at 857.102 kb on - strand, within GFF1981 at 857.399 kb on + strand, within GFF1981 at 857.399 kb on + strand, within GFF1981 at 857.400 kb on - strand, within GFF1981 at 857.400 kb on - strand, within GFF1981
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 854,643 - GFF1979 0.22 +1.0 854,666 + GFF1979 0.24 -1.6 854,666 + GFF1979 0.24 -0.4 854,889 - GFF1979 0.41 -0.3 854,889 - GFF1979 0.41 +0.8 855,128 + GFF1979 0.61 -0.6 855,128 + GFF1979 0.61 +0.8 855,128 + GFF1979 0.61 -0.0 855,128 + GFF1979 0.61 +1.8 855,128 + GFF1979 0.61 +0.4 855,128 + GFF1979 0.61 -0.6 855,129 - GFF1979 0.61 -0.3 855,129 - GFF1979 0.61 +0.2 855,252 - GFF1979 0.71 +0.8 855,323 + GFF1979 0.76 -0.9 855,323 + GFF1979 0.76 +1.4 855,324 - GFF1979 0.76 +1.0 855,324 - GFF1979 0.76 -0.2 855,338 + GFF1979 0.78 +0.9 855,476 + GFF1979 0.89 -0.5 855,893 + GFF1980 0.32 -0.1 856,259 + GFF1980 0.78 +0.5 856,259 + GFF1980 0.78 -1.4 856,259 + GFF1980 0.78 +0.9 856,260 - GFF1980 0.78 +1.1 856,286 + GFF1980 0.82 -0.6 856,484 + -0.8 856,555 + GFF1981 0.11 +1.3 856,556 - GFF1981 0.11 -1.6 856,561 - GFF1981 0.12 -0.5 856,675 + GFF1981 0.22 -0.3 856,676 - GFF1981 0.22 -0.2 856,676 - GFF1981 0.22 -0.3 856,795 + GFF1981 0.33 -0.2 857,101 + GFF1981 0.60 +0.2 857,102 - GFF1981 0.60 -1.2 857,399 + GFF1981 0.87 +0.4 857,399 + GFF1981 0.87 +1.1 857,400 - GFF1981 0.87 -1.7 857,400 - GFF1981 0.87 +1.3
Or see this region's nucleotide sequence