Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1910 and GFF1911 are separated by 146 nucleotides GFF1911 and GFF1912 are separated by 131 nucleotides GFF1912 and GFF1913 are separated by 19 nucleotides GFF1913 and GFF1914 are separated by 10 nucleotides
GFF1910 - Cys regulon transcriptional activator CysB, at 783,540 to 784,427
GFF1910
GFF1911 - hypothetical protein, at 784,574 to 784,966
GFF1911
GFF1912 - integral membrane protein, at 785,098 to 786,570
GFF1912
GFF1913 - Permease of the drug/metabolite transporter (DMT) superfamily, at 786,590 to 786,952
GFF1913
GFF1914 - FIG00931613: hypothetical protein, at 786,963 to 788,510
GFF1914
Position (kb) 785
786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 784.393 kb on + strand at 784.393 kb on + strand at 784.393 kb on + strand at 784.394 kb on - strand at 784.394 kb on - strand at 784.394 kb on - strand at 784.394 kb on - strand at 784.396 kb on + strand at 784.396 kb on + strand at 784.408 kb on + strand at 784.409 kb on - strand at 784.409 kb on - strand at 784.490 kb on + strand at 784.490 kb on + strand at 785.066 kb on - strand at 785.143 kb on + strand at 785.143 kb on + strand at 785.143 kb on + strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.144 kb on - strand at 785.320 kb on + strand, within GFF1912 at 785.321 kb on - strand, within GFF1912 at 785.321 kb on - strand, within GFF1912 at 785.341 kb on + strand, within GFF1912 at 785.341 kb on + strand, within GFF1912 at 785.341 kb on + strand, within GFF1912 at 785.342 kb on - strand, within GFF1912 at 785.342 kb on - strand, within GFF1912 at 785.845 kb on + strand, within GFF1912 at 785.845 kb on + strand, within GFF1912 at 785.845 kb on + strand, within GFF1912 at 785.845 kb on + strand, within GFF1912 at 785.845 kb on + strand, within GFF1912 at 785.846 kb on - strand, within GFF1912 at 785.846 kb on - strand, within GFF1912 at 785.846 kb on - strand, within GFF1912 at 785.846 kb on - strand, within GFF1912 at 786.028 kb on + strand, within GFF1912 at 786.029 kb on - strand, within GFF1912 at 786.029 kb on - strand, within GFF1912 at 786.050 kb on - strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.106 kb on + strand, within GFF1912 at 786.107 kb on - strand, within GFF1912 at 786.107 kb on - strand, within GFF1912 at 786.349 kb on + strand, within GFF1912 at 786.350 kb on - strand, within GFF1912 at 786.379 kb on + strand, within GFF1912 at 786.379 kb on + strand, within GFF1912 at 786.380 kb on - strand, within GFF1912 at 786.380 kb on - strand, within GFF1912 at 786.380 kb on - strand, within GFF1912 at 786.707 kb on + strand, within GFF1913 at 786.707 kb on + strand, within GFF1913 at 786.708 kb on - strand, within GFF1913 at 786.755 kb on + strand, within GFF1913 at 786.756 kb on - strand, within GFF1913 at 787.089 kb on + strand at 787.119 kb on + strand, within GFF1914 at 787.120 kb on - strand, within GFF1914 at 787.120 kb on - strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.306 kb on - strand, within GFF1914 at 787.392 kb on + strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.437 kb on + strand, within GFF1914 at 787.437 kb on + strand, within GFF1914 at 787.438 kb on - strand, within GFF1914 at 787.438 kb on - strand, within GFF1914 at 787.482 kb on + strand, within GFF1914 at 787.482 kb on + strand, within GFF1914 at 787.483 kb on - strand, within GFF1914 at 787.483 kb on - strand, within GFF1914 at 787.483 kb on - strand, within GFF1914 at 787.510 kb on - strand, within GFF1914
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 784,393 + -0.2 784,393 + -0.6 784,393 + -0.4 784,394 - -0.7 784,394 - -1.0 784,394 - +0.2 784,394 - -0.9 784,396 + +1.1 784,396 + -0.2 784,408 + +0.8 784,409 - -1.3 784,409 - +0.5 784,490 + -1.4 784,490 + -1.4 785,066 - -0.2 785,143 + -0.2 785,143 + -3.1 785,143 + -0.2 785,144 - -1.3 785,144 - -1.4 785,144 - -1.2 785,144 - -0.4 785,144 - -0.4 785,320 + GFF1912 0.15 -2.0 785,321 - GFF1912 0.15 -0.8 785,321 - GFF1912 0.15 -0.6 785,341 + GFF1912 0.16 -2.3 785,341 + GFF1912 0.16 -1.6 785,341 + GFF1912 0.16 -0.9 785,342 - GFF1912 0.17 -1.1 785,342 - GFF1912 0.17 -1.1 785,845 + GFF1912 0.51 -1.9 785,845 + GFF1912 0.51 -0.0 785,845 + GFF1912 0.51 -0.5 785,845 + GFF1912 0.51 -1.1 785,845 + GFF1912 0.51 +0.4 785,846 - GFF1912 0.51 +0.4 785,846 - GFF1912 0.51 -0.2 785,846 - GFF1912 0.51 -0.3 785,846 - GFF1912 0.51 -0.9 786,028 + GFF1912 0.63 -1.6 786,029 - GFF1912 0.63 +0.1 786,029 - GFF1912 0.63 -0.6 786,050 - GFF1912 0.65 -1.0 786,058 + GFF1912 0.65 -0.6 786,058 + GFF1912 0.65 -0.6 786,058 + GFF1912 0.65 +0.4 786,058 + GFF1912 0.65 -0.8 786,106 + GFF1912 0.68 -0.4 786,107 - GFF1912 0.68 -1.4 786,107 - GFF1912 0.68 +1.8 786,349 + GFF1912 0.85 -0.8 786,350 - GFF1912 0.85 -0.2 786,379 + GFF1912 0.87 +0.6 786,379 + GFF1912 0.87 -0.6 786,380 - GFF1912 0.87 +0.1 786,380 - GFF1912 0.87 -1.2 786,380 - GFF1912 0.87 -1.3 786,707 + GFF1913 0.32 +0.4 786,707 + GFF1913 0.32 +1.6 786,708 - GFF1913 0.33 +1.8 786,755 + GFF1913 0.45 +1.1 786,756 - GFF1913 0.46 +1.3 787,089 + -1.4 787,119 + GFF1914 0.10 +1.2 787,120 - GFF1914 0.10 -0.3 787,120 - GFF1914 0.10 +0.1 787,305 + GFF1914 0.22 -1.9 787,305 + GFF1914 0.22 -0.4 787,305 + GFF1914 0.22 -0.9 787,305 + GFF1914 0.22 -0.2 787,306 - GFF1914 0.22 +0.4 787,392 + GFF1914 0.28 -1.4 787,393 - GFF1914 0.28 -0.5 787,393 - GFF1914 0.28 -0.9 787,393 - GFF1914 0.28 +1.2 787,393 - GFF1914 0.28 +0.1 787,437 + GFF1914 0.31 -0.6 787,437 + GFF1914 0.31 -1.2 787,438 - GFF1914 0.31 -0.8 787,438 - GFF1914 0.31 -1.5 787,482 + GFF1914 0.34 -0.0 787,482 + GFF1914 0.34 +1.1 787,483 - GFF1914 0.34 -1.0 787,483 - GFF1914 0.34 +0.2 787,483 - GFF1914 0.34 -1.7 787,510 - GFF1914 0.35 -0.7
Or see this region's nucleotide sequence