Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1892 and GFF1893 are separated by 9 nucleotides GFF1893 and GFF1894 are separated by 92 nucleotides GFF1894 and GFF1895 are separated by 132 nucleotides
GFF1892 - Ammonium transporter, at 756,049 to 757,344
GFF1892
GFF1893 - hypothetical protein, at 757,354 to 757,659
GFF1893
GFF1894 - Choline dehydrogenase (EC 1.1.99.1), at 757,752 to 759,410
GFF1894
GFF1895 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 759,543 to 761,060
GFF1895
Position (kb) 757
758
759
760 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 757.219 kb on + strand at 757.220 kb on - strand at 757.220 kb on - strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.639 kb on + strand at 757.640 kb on - strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.643 kb on + strand at 757.644 kb on - strand at 757.644 kb on - strand at 757.815 kb on - strand at 757.815 kb on - strand at 757.815 kb on - strand at 758.005 kb on + strand, within GFF1894 at 758.006 kb on - strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.038 kb on + strand, within GFF1894 at 758.039 kb on - strand, within GFF1894 at 758.039 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.126 kb on - strand, within GFF1894 at 758.282 kb on - strand, within GFF1894 at 758.297 kb on - strand, within GFF1894 at 758.377 kb on + strand, within GFF1894 at 758.377 kb on + strand, within GFF1894 at 758.377 kb on + strand, within GFF1894 at 758.378 kb on - strand, within GFF1894 at 758.378 kb on - strand, within GFF1894 at 758.378 kb on - strand, within GFF1894 at 758.452 kb on + strand, within GFF1894 at 758.452 kb on + strand, within GFF1894 at 758.752 kb on + strand, within GFF1894 at 758.753 kb on - strand, within GFF1894 at 758.753 kb on - strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.122 kb on - strand, within GFF1894 at 759.122 kb on - strand, within GFF1894 at 759.122 kb on - strand, within GFF1894 at 759.217 kb on + strand, within GFF1894 at 759.218 kb on - strand, within GFF1894 at 759.250 kb on + strand at 759.251 kb on - strand at 759.257 kb on - strand at 759.283 kb on + strand at 759.284 kb on - strand at 759.388 kb on + strand at 759.456 kb on - strand at 759.544 kb on + strand at 759.544 kb on + strand at 759.545 kb on - strand at 759.545 kb on - strand at 759.589 kb on - strand at 759.625 kb on + strand at 759.626 kb on - strand at 759.901 kb on + strand, within GFF1895 at 759.901 kb on + strand, within GFF1895 at 760.046 kb on - strand, within GFF1895 at 760.229 kb on - strand, within GFF1895 at 760.348 kb on + strand, within GFF1895 at 760.348 kb on + strand, within GFF1895 at 760.349 kb on - strand, within GFF1895
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 757,219 + -0.5 757,220 - +1.7 757,220 - -0.7 757,639 + +1.4 757,639 + +0.2 757,639 + +0.2 757,639 + -0.6 757,639 + -0.1 757,639 + -0.5 757,639 + +0.9 757,640 - -0.1 757,643 + -1.8 757,643 + -1.2 757,643 + +0.4 757,643 + -1.0 757,643 + +0.0 757,644 - +0.4 757,644 - +0.6 757,815 - -1.1 757,815 - -1.5 757,815 - -0.2 758,005 + GFF1894 0.15 -0.2 758,006 - GFF1894 0.15 +1.3 758,038 + GFF1894 0.17 -1.2 758,038 + GFF1894 0.17 +0.2 758,038 + GFF1894 0.17 -0.2 758,038 + GFF1894 0.17 -0.6 758,038 + GFF1894 0.17 -0.4 758,038 + GFF1894 0.17 -0.4 758,039 - GFF1894 0.17 -0.5 758,039 - GFF1894 0.17 +0.5 758,126 - GFF1894 0.23 +1.0 758,126 - GFF1894 0.23 -0.3 758,126 - GFF1894 0.23 -0.8 758,126 - GFF1894 0.23 -0.8 758,282 - GFF1894 0.32 -0.6 758,297 - GFF1894 0.33 +0.2 758,377 + GFF1894 0.38 +0.6 758,377 + GFF1894 0.38 -0.6 758,377 + GFF1894 0.38 +0.1 758,378 - GFF1894 0.38 -1.0 758,378 - GFF1894 0.38 -0.2 758,378 - GFF1894 0.38 -0.6 758,452 + GFF1894 0.42 +0.1 758,452 + GFF1894 0.42 +0.5 758,752 + GFF1894 0.60 +1.1 758,753 - GFF1894 0.60 -0.5 758,753 - GFF1894 0.60 -0.6 759,121 + GFF1894 0.83 -0.8 759,121 + GFF1894 0.83 +0.5 759,121 + GFF1894 0.83 +0.4 759,121 + GFF1894 0.83 +0.2 759,121 + GFF1894 0.83 +1.4 759,121 + GFF1894 0.83 -0.0 759,122 - GFF1894 0.83 -0.8 759,122 - GFF1894 0.83 -0.8 759,122 - GFF1894 0.83 -0.9 759,217 + GFF1894 0.88 -0.5 759,218 - GFF1894 0.88 -0.9 759,250 + -1.1 759,251 - -0.8 759,257 - +0.4 759,283 + -0.3 759,284 - +0.5 759,388 + -0.6 759,456 - -0.1 759,544 + -0.0 759,544 + -0.8 759,545 - +0.5 759,545 - +0.4 759,589 - +2.3 759,625 + +2.6 759,626 - +2.4 759,901 + GFF1895 0.24 +3.8 759,901 + GFF1895 0.24 +3.0 760,046 - GFF1895 0.33 +2.8 760,229 - GFF1895 0.45 +2.7 760,348 + GFF1895 0.53 +2.9 760,348 + GFF1895 0.53 +2.1 760,349 - GFF1895 0.53 +2.7
Or see this region's nucleotide sequence