Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1696 and GFF1697 are separated by 35 nucleotides GFF1697 and GFF1698 are separated by 4 nucleotides GFF1698 and GFF1699 overlap by 1 nucleotides
GFF1696 - Probable MFS transporter precursor, at 546,461 to 547,714
GFF1696
GFF1697 - hypothetical protein, at 547,750 to 548,130
GFF1697
GFF1698 - Ferredoxin, at 548,135 to 548,461
GFF1698
GFF1699 - Excinuclease ABC subunit A, dimeric form, at 548,461 to 554,340
GFF1699
Position (kb) 548
549 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 547.190 kb on + strand, within GFF1696 at 547.191 kb on - strand, within GFF1696 at 547.473 kb on - strand, within GFF1696 at 547.473 kb on - strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.553 kb on + strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.554 kb on - strand, within GFF1696 at 547.855 kb on - strand, within GFF1697 at 548.280 kb on + strand, within GFF1698 at 548.729 kb on + strand at 548.729 kb on + strand at 548.730 kb on - strand at 548.730 kb on - strand at 548.858 kb on + strand at 548.858 kb on + strand at 548.858 kb on + strand at 549.140 kb on + strand, within GFF1699 at 549.206 kb on + strand, within GFF1699 at 549.206 kb on + strand, within GFF1699 at 549.207 kb on - strand, within GFF1699 at 549.207 kb on - strand, within GFF1699 at 549.317 kb on + strand, within GFF1699
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 547,190 + GFF1696 0.58 +0.2 547,191 - GFF1696 0.58 +0.5 547,473 - GFF1696 0.81 +0.3 547,473 - GFF1696 0.81 -0.5 547,553 + GFF1696 0.87 -0.2 547,553 + GFF1696 0.87 +0.1 547,553 + GFF1696 0.87 -0.0 547,553 + GFF1696 0.87 -2.7 547,554 - GFF1696 0.87 -1.5 547,554 - GFF1696 0.87 -0.0 547,554 - GFF1696 0.87 +0.3 547,554 - GFF1696 0.87 -1.0 547,855 - GFF1697 0.28 -0.5 548,280 + GFF1698 0.44 -1.1 548,729 + +1.2 548,729 + +0.9 548,730 - +0.2 548,730 - -0.4 548,858 + +0.6 548,858 + +0.0 548,858 + +0.3 549,140 + GFF1699 0.12 +0.2 549,206 + GFF1699 0.13 -0.0 549,206 + GFF1699 0.13 +0.1 549,207 - GFF1699 0.13 -0.7 549,207 - GFF1699 0.13 +0.0 549,317 + GFF1699 0.15 +3.3
Or see this region's nucleotide sequence