Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1605 and GFF1606 are separated by 43 nucleotides GFF1606 and GFF1607 are separated by 15 nucleotides GFF1607 and GFF1608 are separated by 62 nucleotides GFF1608 and GFF1609 are separated by 37 nucleotides
GFF1605 - Ankyrin, at 460,688 to 461,344
GFF1605
GFF1606 - Transcriptional regulator, LysR family, at 461,388 to 462,275
GFF1606
GFF1607 - putative cyclase, at 462,291 to 463,271
GFF1607
GFF1608 - Transcriptional regulator, TetR family, at 463,334 to 463,951
GFF1608
GFF1609 - Regulator of competence-specific genes, at 463,989 to 464,345
GFF1609
Position (kb) 462
463
464 Strain fitness (log2 ratio) -1
0
1
2
3 at 461.358 kb on + strand at 461.358 kb on + strand at 461.359 kb on - strand at 461.359 kb on - strand at 461.359 kb on - strand at 461.359 kb on - strand at 461.359 kb on - strand at 461.359 kb on - strand at 461.393 kb on - strand at 461.626 kb on - strand, within GFF1606 at 461.826 kb on + strand, within GFF1606 at 462.189 kb on + strand at 462.189 kb on + strand at 462.189 kb on + strand at 462.190 kb on - strand at 462.190 kb on - strand at 462.269 kb on + strand at 462.269 kb on + strand at 462.269 kb on + strand at 462.269 kb on + strand at 462.270 kb on + strand at 462.270 kb on - strand at 462.270 kb on - strand at 462.270 kb on - strand at 462.273 kb on + strand at 462.273 kb on + strand at 462.273 kb on + strand at 462.273 kb on + strand at 462.273 kb on + strand at 462.274 kb on - strand at 462.409 kb on + strand, within GFF1607 at 462.409 kb on + strand, within GFF1607 at 462.409 kb on + strand, within GFF1607 at 462.409 kb on + strand, within GFF1607 at 462.410 kb on - strand, within GFF1607 at 462.410 kb on - strand, within GFF1607 at 462.410 kb on - strand, within GFF1607 at 462.410 kb on - strand, within GFF1607 at 462.539 kb on - strand, within GFF1607 at 462.539 kb on - strand, within GFF1607 at 462.539 kb on - strand, within GFF1607 at 462.670 kb on + strand, within GFF1607 at 462.671 kb on - strand, within GFF1607 at 462.671 kb on - strand, within GFF1607 at 462.685 kb on + strand, within GFF1607 at 462.686 kb on - strand, within GFF1607 at 462.955 kb on + strand, within GFF1607 at 462.955 kb on + strand, within GFF1607 at 462.955 kb on + strand, within GFF1607 at 462.956 kb on - strand, within GFF1607 at 462.956 kb on - strand, within GFF1607 at 462.956 kb on - strand, within GFF1607 at 462.956 kb on - strand, within GFF1607 at 462.956 kb on - strand, within GFF1607 at 462.956 kb on - strand, within GFF1607 at 462.956 kb on - strand, within GFF1607 at 463.000 kb on + strand, within GFF1607 at 463.000 kb on + strand, within GFF1607 at 463.000 kb on + strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.034 kb on - strand, within GFF1607 at 463.034 kb on - strand, within GFF1607 at 463.034 kb on - strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.065 kb on - strand, within GFF1607 at 463.189 kb on + strand at 463.189 kb on + strand at 463.189 kb on + strand at 463.190 kb on - strand at 463.190 kb on - strand at 463.330 kb on + strand at 463.407 kb on + strand, within GFF1608 at 463.407 kb on + strand, within GFF1608 at 463.408 kb on - strand, within GFF1608 at 463.408 kb on - strand, within GFF1608 at 463.408 kb on - strand, within GFF1608 at 463.797 kb on + strand, within GFF1608 at 463.798 kb on - strand, within GFF1608 at 463.798 kb on - strand, within GFF1608 at 463.801 kb on - strand, within GFF1608 at 463.801 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.977 kb on + strand at 463.977 kb on + strand at 464.229 kb on + strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.230 kb on - strand, within GFF1609
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 461,358 + -1.5 461,358 + -0.6 461,359 - +0.4 461,359 - +0.1 461,359 - -1.6 461,359 - +0.1 461,359 - -1.5 461,359 - +1.5 461,393 - -0.6 461,626 - GFF1606 0.27 +0.2 461,826 + GFF1606 0.49 +1.0 462,189 + +1.4 462,189 + -0.2 462,189 + -0.4 462,190 - -0.6 462,190 - +2.1 462,269 + +3.2 462,269 + +1.2 462,269 + +0.4 462,269 + +0.1 462,270 + -0.2 462,270 - -0.2 462,270 - +0.3 462,270 - -1.6 462,273 + +1.8 462,273 + +0.2 462,273 + -0.6 462,273 + -0.1 462,273 + -0.6 462,274 - -0.2 462,409 + GFF1607 0.12 +1.4 462,409 + GFF1607 0.12 +0.7 462,409 + GFF1607 0.12 -0.1 462,409 + GFF1607 0.12 -0.2 462,410 - GFF1607 0.12 +0.2 462,410 - GFF1607 0.12 -1.6 462,410 - GFF1607 0.12 -0.6 462,410 - GFF1607 0.12 -1.1 462,539 - GFF1607 0.25 +1.9 462,539 - GFF1607 0.25 -0.2 462,539 - GFF1607 0.25 +0.0 462,670 + GFF1607 0.39 +0.1 462,671 - GFF1607 0.39 -0.2 462,671 - GFF1607 0.39 +0.2 462,685 + GFF1607 0.40 +1.0 462,686 - GFF1607 0.40 -0.5 462,955 + GFF1607 0.68 +0.4 462,955 + GFF1607 0.68 +1.8 462,955 + GFF1607 0.68 +1.4 462,956 - GFF1607 0.68 -0.1 462,956 - GFF1607 0.68 +1.4 462,956 - GFF1607 0.68 +1.6 462,956 - GFF1607 0.68 -0.1 462,956 - GFF1607 0.68 -0.5 462,956 - GFF1607 0.68 -1.5 462,956 - GFF1607 0.68 -0.1 463,000 + GFF1607 0.72 +0.4 463,000 + GFF1607 0.72 +1.4 463,000 + GFF1607 0.72 +2.1 463,001 - GFF1607 0.72 +0.4 463,001 - GFF1607 0.72 +0.7 463,001 - GFF1607 0.72 -0.2 463,001 - GFF1607 0.72 +0.2 463,034 - GFF1607 0.76 +1.4 463,034 - GFF1607 0.76 +0.2 463,034 - GFF1607 0.76 -0.0 463,051 + GFF1607 0.77 +0.0 463,051 + GFF1607 0.77 -0.5 463,051 + GFF1607 0.77 -0.4 463,051 + GFF1607 0.77 +0.2 463,051 + GFF1607 0.77 +0.5 463,051 + GFF1607 0.77 +0.3 463,051 + GFF1607 0.77 +0.6 463,052 - GFF1607 0.78 +2.3 463,052 - GFF1607 0.78 +1.4 463,052 - GFF1607 0.78 -0.6 463,052 - GFF1607 0.78 +1.7 463,052 - GFF1607 0.78 +0.2 463,052 - GFF1607 0.78 -1.2 463,052 - GFF1607 0.78 +1.8 463,065 - GFF1607 0.79 +0.1 463,189 + +0.4 463,189 + +2.1 463,189 + +3.4 463,190 - +1.2 463,190 - +0.8 463,330 + -1.0 463,407 + GFF1608 0.12 +1.0 463,407 + GFF1608 0.12 +0.5 463,408 - GFF1608 0.12 -0.3 463,408 - GFF1608 0.12 -0.2 463,408 - GFF1608 0.12 +1.8 463,797 + GFF1608 0.75 -0.1 463,798 - GFF1608 0.75 -0.2 463,798 - GFF1608 0.75 +0.8 463,801 - GFF1608 0.76 +0.4 463,801 - GFF1608 0.76 -1.2 463,807 - GFF1608 0.77 -1.6 463,807 - GFF1608 0.77 +0.8 463,807 - GFF1608 0.77 +0.5 463,807 - GFF1608 0.77 +0.4 463,807 - GFF1608 0.77 -0.1 463,977 + +1.4 463,977 + -0.6 464,229 + GFF1609 0.67 +0.6 464,230 - GFF1609 0.68 -0.5 464,230 - GFF1609 0.68 +0.4 464,230 - GFF1609 0.68 -0.3
Or see this region's nucleotide sequence