Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1579 and GFF1580 are separated by 46 nucleotides GFF1580 and GFF1581 overlap by 8 nucleotides GFF1581 and GFF1582 are separated by 135 nucleotides
GFF1579 - Tricarboxylate transport protein TctC, at 433,814 to 434,905
GFF1579
GFF1580 - Transcriptional regulator, LysR family, at 434,952 to 435,854
GFF1580
GFF1581 - hypothetical protein, at 435,847 to 437,343
GFF1581
GFF1582 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 437,479 to 439,131
GFF1582
Position (kb) 435
436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 434.943 kb on - strand at 435.462 kb on + strand, within GFF1580 at 435.920 kb on + strand at 435.920 kb on + strand at 435.920 kb on + strand at 435.920 kb on + strand at 435.921 kb on - strand at 435.921 kb on - strand at 435.975 kb on - strand at 436.496 kb on + strand, within GFF1581 at 436.717 kb on + strand, within GFF1581 at 436.718 kb on + strand, within GFF1581 at 436.719 kb on - strand, within GFF1581 at 436.719 kb on - strand, within GFF1581 at 436.748 kb on + strand, within GFF1581 at 436.749 kb on - strand, within GFF1581 at 436.749 kb on - strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.929 kb on - strand, within GFF1581 at 436.929 kb on - strand, within GFF1581 at 436.986 kb on - strand, within GFF1581 at 437.455 kb on + strand at 437.455 kb on + strand at 437.456 kb on - strand at 437.500 kb on + strand at 437.501 kb on - strand at 437.593 kb on + strand at 437.620 kb on + strand at 437.956 kb on + strand, within GFF1582 at 437.957 kb on - strand, within GFF1582 at 438.004 kb on + strand, within GFF1582 at 438.004 kb on + strand, within GFF1582
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 434,943 - -0.2 435,462 + GFF1580 0.56 +1.2 435,920 + -1.5 435,920 + -0.3 435,920 + -1.3 435,920 + -1.0 435,921 - -0.1 435,921 - -0.8 435,975 - +0.1 436,496 + GFF1581 0.43 -0.3 436,717 + GFF1581 0.58 +0.8 436,718 + GFF1581 0.58 -0.6 436,719 - GFF1581 0.58 +0.9 436,719 - GFF1581 0.58 +2.3 436,748 + GFF1581 0.60 +3.6 436,749 - GFF1581 0.60 -0.8 436,749 - GFF1581 0.60 -1.1 436,928 + GFF1581 0.72 -0.2 436,928 + GFF1581 0.72 -0.6 436,928 + GFF1581 0.72 +0.6 436,929 - GFF1581 0.72 +1.4 436,929 - GFF1581 0.72 -0.2 436,986 - GFF1581 0.76 -1.8 437,455 + +0.0 437,455 + -0.5 437,456 - -0.6 437,500 + -0.2 437,501 - -0.4 437,593 + +0.1 437,620 + -0.4 437,956 + GFF1582 0.29 -0.5 437,957 - GFF1582 0.29 -0.7 438,004 + GFF1582 0.32 +1.2 438,004 + GFF1582 0.32 +0.1
Or see this region's nucleotide sequence