Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1562 and GFF1563 are separated by 137 nucleotides GFF1563 and GFF1564 are separated by 57 nucleotides GFF1564 and GFF1565 are separated by 109 nucleotides
GFF1562 - hypothetical protein, at 417,194 to 417,643
GFF1562
GFF1563 - Outer membrane lipoprotein blc precursor, at 417,781 to 418,320
GFF1563
GFF1564 - Transcriptional regulator, IclR family, at 418,378 to 419,178
GFF1564
GFF1565 - Tricarboxylate transport protein TctC, at 419,288 to 420,265
GFF1565
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1
2
3 at 417.456 kb on + strand, within GFF1562 at 417.531 kb on + strand, within GFF1562 at 417.532 kb on - strand, within GFF1562 at 417.900 kb on - strand, within GFF1563 at 417.962 kb on + strand, within GFF1563 at 418.331 kb on + strand at 418.332 kb on - strand at 418.502 kb on + strand, within GFF1564 at 418.502 kb on + strand, within GFF1564 at 418.503 kb on - strand, within GFF1564 at 418.701 kb on - strand, within GFF1564 at 418.701 kb on - strand, within GFF1564 at 418.701 kb on - strand, within GFF1564 at 419.186 kb on - strand at 419.233 kb on + strand at 419.275 kb on - strand at 419.702 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.759 kb on + strand, within GFF1565 at 419.760 kb on - strand, within GFF1565
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 417,456 + GFF1562 0.58 +0.4 417,531 + GFF1562 0.75 -0.6 417,532 - GFF1562 0.75 -0.9 417,900 - GFF1563 0.22 +0.7 417,962 + GFF1563 0.34 +0.7 418,331 + -0.3 418,332 - +0.4 418,502 + GFF1564 0.15 -0.9 418,502 + GFF1564 0.15 +0.1 418,503 - GFF1564 0.16 -1.2 418,701 - GFF1564 0.40 +0.4 418,701 - GFF1564 0.40 -0.5 418,701 - GFF1564 0.40 +1.0 419,186 - +1.4 419,233 + +3.1 419,275 - -0.3 419,702 + GFF1565 0.42 +0.7 419,759 + GFF1565 0.48 +0.2 419,759 + GFF1565 0.48 -0.2 419,759 + GFF1565 0.48 -0.5 419,759 + GFF1565 0.48 +0.6 419,760 - GFF1565 0.48 -0.2
Or see this region's nucleotide sequence