Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1561 and GFF1562 are separated by 1 nucleotides GFF1562 and GFF1563 are separated by 137 nucleotides GFF1563 and GFF1564 are separated by 57 nucleotides GFF1564 and GFF1565 are separated by 109 nucleotides
GFF1561 - hypothetical protein, at 416,239 to 417,192
GFF1561
GFF1562 - hypothetical protein, at 417,194 to 417,643
GFF1562
GFF1563 - Outer membrane lipoprotein blc precursor, at 417,781 to 418,320
GFF1563
GFF1564 - Transcriptional regulator, IclR family, at 418,378 to 419,178
GFF1564
GFF1565 - Tricarboxylate transport protein TctC, at 419,288 to 420,265
GFF1565
Position (kb) 417
418
419 Strain fitness (log2 ratio) -1
0
1
2
3 at 417.053 kb on - strand, within GFF1561 at 417.195 kb on + strand at 417.196 kb on - strand at 417.196 kb on - strand at 417.196 kb on - strand at 417.199 kb on - strand at 417.288 kb on + strand, within GFF1562 at 417.288 kb on + strand, within GFF1562 at 417.288 kb on + strand, within GFF1562 at 417.289 kb on - strand, within GFF1562 at 417.456 kb on + strand, within GFF1562 at 417.531 kb on + strand, within GFF1562 at 417.532 kb on - strand, within GFF1562 at 417.900 kb on - strand, within GFF1563 at 417.962 kb on + strand, within GFF1563 at 418.331 kb on + strand at 418.332 kb on - strand at 418.502 kb on + strand, within GFF1564 at 418.502 kb on + strand, within GFF1564 at 418.503 kb on - strand, within GFF1564 at 418.701 kb on - strand, within GFF1564 at 418.701 kb on - strand, within GFF1564 at 418.701 kb on - strand, within GFF1564 at 419.186 kb on - strand at 419.233 kb on + strand at 419.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 417,053 - GFF1561 0.85 +0.9 417,195 + +0.4 417,196 - -0.0 417,196 - -0.6 417,196 - +2.0 417,199 - -0.1 417,288 + GFF1562 0.21 +0.3 417,288 + GFF1562 0.21 -0.6 417,288 + GFF1562 0.21 -0.1 417,289 - GFF1562 0.21 -0.5 417,456 + GFF1562 0.58 +0.4 417,531 + GFF1562 0.75 -0.6 417,532 - GFF1562 0.75 -0.9 417,900 - GFF1563 0.22 +0.7 417,962 + GFF1563 0.34 +0.7 418,331 + -0.3 418,332 - +0.4 418,502 + GFF1564 0.15 -0.9 418,502 + GFF1564 0.15 +0.1 418,503 - GFF1564 0.16 -1.2 418,701 - GFF1564 0.40 +0.4 418,701 - GFF1564 0.40 -0.5 418,701 - GFF1564 0.40 +1.0 419,186 - +1.4 419,233 + +3.1 419,275 - -0.3
Or see this region's nucleotide sequence