Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1531 and GFF1532 are separated by 9 nucleotides GFF1532 and GFF1533 are separated by 69 nucleotides GFF1533 and GFF1534 are separated by 23 nucleotides
GFF1531 - putative exported protein, at 385,960 to 386,955
GFF1531
GFF1532 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 386,965 to 388,581
GFF1532
GFF1533 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 388,651 to 389,403
GFF1533
GFF1534 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 389,427 to 390,344
GFF1534
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -1
0
1
2
3 at 386.446 kb on + strand, within GFF1531 at 386.446 kb on + strand, within GFF1531 at 386.737 kb on + strand, within GFF1531 at 387.211 kb on + strand, within GFF1532 at 387.259 kb on + strand, within GFF1532 at 387.296 kb on - strand, within GFF1532 at 387.296 kb on - strand, within GFF1532 at 387.326 kb on - strand, within GFF1532 at 387.326 kb on - strand, within GFF1532 at 387.484 kb on + strand, within GFF1532 at 387.485 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.766 kb on + strand, within GFF1532 at 387.767 kb on - strand, within GFF1532 at 387.916 kb on + strand, within GFF1532 at 388.195 kb on + strand, within GFF1532 at 388.196 kb on - strand, within GFF1532 at 388.324 kb on + strand, within GFF1532 at 388.325 kb on - strand, within GFF1532 at 388.662 kb on - strand at 388.821 kb on - strand, within GFF1533 at 389.479 kb on + strand at 389.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 386,446 + GFF1531 0.49 -1.1 386,446 + GFF1531 0.49 -0.6 386,737 + GFF1531 0.78 -0.0 387,211 + GFF1532 0.15 -0.6 387,259 + GFF1532 0.18 -0.2 387,296 - GFF1532 0.20 +0.3 387,296 - GFF1532 0.20 -0.6 387,326 - GFF1532 0.22 +2.9 387,326 - GFF1532 0.22 -1.0 387,484 + GFF1532 0.32 +1.4 387,485 - GFF1532 0.32 -0.6 387,638 - GFF1532 0.42 +1.0 387,638 - GFF1532 0.42 +2.2 387,638 - GFF1532 0.42 +0.8 387,638 - GFF1532 0.42 +0.2 387,766 + GFF1532 0.50 +2.2 387,767 - GFF1532 0.50 +0.2 387,916 + GFF1532 0.59 +3.5 388,195 + GFF1532 0.76 +0.4 388,196 - GFF1532 0.76 +1.4 388,324 + GFF1532 0.84 -0.6 388,325 - GFF1532 0.84 -0.4 388,662 - -0.6 388,821 - GFF1533 0.23 -0.0 389,479 + -0.2 389,480 - -0.1
Or see this region's nucleotide sequence