Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1428 and GFF1429 are separated by 2 nucleotides GFF1429 and GFF1430 overlap by 8 nucleotides GFF1430 and GFF1431 overlap by 4 nucleotides
GFF1428 - RNA polymerase sigma factor for flagellar operon, at 282,614 to 283,330
GFF1428
GFF1429 - hypothetical protein, at 283,333 to 284,133
GFF1429
GFF1430 - Flagellar biosynthesis protein FlhF, at 284,126 to 285,637
GFF1430
GFF1431 - Flagellar biosynthesis protein FlhA, at 285,634 to 287,709
GFF1431
Position (kb) 284
285
286 Strain fitness (log2 ratio) -1
0
1
2 at 283.326 kb on + strand at 283.326 kb on + strand at 283.326 kb on + strand at 283.326 kb on + strand at 283.327 kb on - strand at 283.327 kb on - strand at 283.327 kb on - strand at 283.688 kb on + strand, within GFF1429 at 283.689 kb on - strand, within GFF1429 at 283.689 kb on - strand, within GFF1429 at 284.028 kb on - strand, within GFF1429 at 284.208 kb on + strand at 284.676 kb on + strand, within GFF1430 at 284.676 kb on + strand, within GFF1430 at 284.677 kb on - strand, within GFF1430 at 285.345 kb on + strand, within GFF1430 at 285.345 kb on + strand, within GFF1430 at 285.345 kb on + strand, within GFF1430 at 285.345 kb on + strand, within GFF1430 at 285.345 kb on + strand, within GFF1430 at 285.346 kb on - strand, within GFF1430 at 285.346 kb on - strand, within GFF1430 at 285.346 kb on - strand, within GFF1430 at 285.346 kb on - strand, within GFF1430 at 285.953 kb on + strand, within GFF1431 at 286.287 kb on + strand, within GFF1431 at 286.287 kb on + strand, within GFF1431 at 286.288 kb on - strand, within GFF1431
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 283,326 + +0.9 283,326 + +0.2 283,326 + +0.6 283,326 + -1.1 283,327 - +0.2 283,327 - +0.3 283,327 - +0.9 283,688 + GFF1429 0.44 -1.0 283,689 - GFF1429 0.44 +0.1 283,689 - GFF1429 0.44 +1.4 284,028 - GFF1429 0.87 -0.4 284,208 + +2.4 284,676 + GFF1430 0.36 -1.4 284,676 + GFF1430 0.36 -0.5 284,677 - GFF1430 0.36 -0.9 285,345 + GFF1430 0.81 -0.0 285,345 + GFF1430 0.81 -0.2 285,345 + GFF1430 0.81 -0.6 285,345 + GFF1430 0.81 +0.1 285,345 + GFF1430 0.81 -1.2 285,346 - GFF1430 0.81 -0.9 285,346 - GFF1430 0.81 +0.7 285,346 - GFF1430 0.81 -0.5 285,346 - GFF1430 0.81 +0.4 285,953 + GFF1431 0.15 -0.4 286,287 + GFF1431 0.31 +1.6 286,287 + GFF1431 0.31 -1.1 286,288 - GFF1431 0.32 -0.5
Or see this region's nucleotide sequence