Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1401

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1401 and GFF1402 overlap by 22 nucleotidesGFF1402 and GFF1403 are separated by 22 nucleotides GFF1401 - Probable glycosyltransferase, at 262,935 to 264,182 GFF1401 GFF1402 - Queuosine Biosynthesis QueC ATPase, at 264,161 to 264,928 GFF1402 GFF1403 - EAL domain protein, at 264,951 to 266,150 GFF1403 Position (kb) 262 263 264 265Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 261.967 kb on + strandat 262.004 kb on - strandat 262.111 kb on - strandat 262.224 kb on + strandat 262.322 kb on + strandat 262.322 kb on + strandat 262.350 kb on + strandat 262.351 kb on - strandat 262.353 kb on + strandat 262.353 kb on + strandat 262.354 kb on - strandat 262.366 kb on + strandat 262.366 kb on + strandat 262.386 kb on + strandat 262.386 kb on + strandat 262.386 kb on + strandat 262.435 kb on + strandat 262.435 kb on + strandat 262.435 kb on + strandat 262.436 kb on - strandat 262.436 kb on - strandat 262.449 kb on + strandat 262.493 kb on + strandat 262.530 kb on - strandat 262.546 kb on - strandat 262.549 kb on + strandat 262.550 kb on - strandat 262.700 kb on + strandat 262.701 kb on - strandat 262.745 kb on + strandat 262.745 kb on + strandat 262.746 kb on - strandat 262.746 kb on - strandat 262.746 kb on - strandat 262.920 kb on - strandat 262.920 kb on - strandat 263.260 kb on + strand, within GFF1401at 263.261 kb on - strand, within GFF1401at 263.261 kb on - strand, within GFF1401at 263.286 kb on + strand, within GFF1401at 263.287 kb on - strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.301 kb on + strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.302 kb on - strand, within GFF1401at 263.456 kb on + strand, within GFF1401at 263.457 kb on - strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.595 kb on + strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.596 kb on - strand, within GFF1401at 263.715 kb on + strand, within GFF1401at 263.715 kb on + strand, within GFF1401at 263.716 kb on - strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.874 kb on + strand, within GFF1401at 263.875 kb on - strand, within GFF1401at 263.875 kb on - strand, within GFF1401at 263.875 kb on - strand, within GFF1401at 263.883 kb on + strand, within GFF1401at 263.884 kb on - strand, within GFF1401at 263.884 kb on - strand, within GFF1401at 263.884 kb on - strand, within GFF1401at 264.112 kb on - strandat 264.180 kb on + strandat 264.180 kb on + strandat 264.180 kb on + strandat 264.181 kb on - strandat 264.181 kb on - strandat 264.235 kb on - strandat 264.270 kb on + strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.271 kb on - strand, within GFF1402at 264.478 kb on - strand, within GFF1402at 264.932 kb on - strandat 265.124 kb on - strand, within GFF1403

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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261,967 + +0.4
262,004 - -0.9
262,111 - +0.2
262,224 + -0.6
262,322 + -0.1
262,322 + -0.2
262,350 + -0.7
262,351 - -0.6
262,353 + -0.3
262,353 + -0.5
262,354 - +0.2
262,366 + -0.6
262,366 + -0.8
262,386 + -1.2
262,386 + +2.0
262,386 + -0.2
262,435 + -0.0
262,435 + +0.9
262,435 + +0.1
262,436 - +2.0
262,436 - -1.2
262,449 + +0.1
262,493 + +1.0
262,530 - -1.1
262,546 - -1.2
262,549 + -0.6
262,550 - -0.3
262,700 + +0.9
262,701 - -0.2
262,745 + +0.9
262,745 + -0.3
262,746 - +0.8
262,746 - -0.2
262,746 - -1.4
262,920 - +1.9
262,920 - +0.4
263,260 + GFF1401 0.26 +0.6
263,261 - GFF1401 0.26 +1.3
263,261 - GFF1401 0.26 +0.1
263,286 + GFF1401 0.28 +0.6
263,287 - GFF1401 0.28 +1.0
263,301 + GFF1401 0.29 +2.7
263,301 + GFF1401 0.29 -1.6
263,301 + GFF1401 0.29 -0.9
263,301 + GFF1401 0.29 +0.6
263,301 + GFF1401 0.29 -0.1
263,301 + GFF1401 0.29 +0.7
263,301 + GFF1401 0.29 +1.4
263,301 + GFF1401 0.29 -0.8
263,301 + GFF1401 0.29 +0.7
263,302 - GFF1401 0.29 +2.4
263,302 - GFF1401 0.29 -0.6
263,302 - GFF1401 0.29 -0.2
263,302 - GFF1401 0.29 +0.4
263,302 - GFF1401 0.29 +0.2
263,302 - GFF1401 0.29 -1.4
263,302 - GFF1401 0.29 +0.4
263,302 - GFF1401 0.29 +0.6
263,302 - GFF1401 0.29 -0.2
263,302 - GFF1401 0.29 +1.0
263,456 + GFF1401 0.42 +0.1
263,457 - GFF1401 0.42 +1.4
263,595 + GFF1401 0.53 +4.5
263,595 + GFF1401 0.53 -0.8
263,595 + GFF1401 0.53 -0.5
263,595 + GFF1401 0.53 +0.1
263,595 + GFF1401 0.53 +0.6
263,595 + GFF1401 0.53 +0.3
263,595 + GFF1401 0.53 -0.6
263,595 + GFF1401 0.53 -0.9
263,595 + GFF1401 0.53 +0.8
263,595 + GFF1401 0.53 +0.3
263,596 - GFF1401 0.53 -0.4
263,596 - GFF1401 0.53 +1.6
263,596 - GFF1401 0.53 +0.1
263,596 - GFF1401 0.53 +0.7
263,596 - GFF1401 0.53 +0.1
263,596 - GFF1401 0.53 +0.7
263,596 - GFF1401 0.53 +0.7
263,596 - GFF1401 0.53 -0.2
263,715 + GFF1401 0.62 +0.1
263,715 + GFF1401 0.62 -0.5
263,716 - GFF1401 0.63 -0.6
263,874 + GFF1401 0.75 +1.1
263,874 + GFF1401 0.75 -0.8
263,874 + GFF1401 0.75 -1.4
263,874 + GFF1401 0.75 -0.5
263,874 + GFF1401 0.75 -0.4
263,874 + GFF1401 0.75 +0.5
263,875 - GFF1401 0.75 +0.4
263,875 - GFF1401 0.75 -0.1
263,875 - GFF1401 0.75 +0.2
263,883 + GFF1401 0.76 -0.6
263,884 - GFF1401 0.76 -1.6
263,884 - GFF1401 0.76 +0.9
263,884 - GFF1401 0.76 -0.2
264,112 - -1.6
264,180 + -0.2
264,180 + -0.9
264,180 + -1.0
264,181 - +0.9
264,181 - +0.3
264,235 - +1.7
264,270 + GFF1402 0.14 +0.2
264,271 - GFF1402 0.14 +2.1
264,271 - GFF1402 0.14 -0.7
264,271 - GFF1402 0.14 +0.8
264,271 - GFF1402 0.14 -0.0
264,478 - GFF1402 0.41 -0.2
264,932 - +1.1
265,124 - GFF1403 0.14 -1.8

Or see this region's nucleotide sequence