Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1381 and GFF1382 are separated by 84 nucleotides GFF1382 and GFF1383 are separated by 13 nucleotides GFF1383 and GFF1384 overlap by 4 nucleotides GFF1384 and GFF1385 are separated by 4 nucleotides
GFF1381 - General secretion pathway protein C, at 237,418 to 237,924
GFF1381
GFF1382 - General secretion pathway protein G, at 238,009 to 238,479
GFF1382
GFF1383 - General secretion pathway protein H, at 238,493 to 238,951
GFF1383
GFF1384 - General secretion pathway protein I, at 238,948 to 239,316
GFF1384
GFF1385 - General secretion pathway protein J, at 239,321 to 240,052
GFF1385
Position (kb) 238
239 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 237.552 kb on - strand, within GFF1381 at 237.632 kb on + strand, within GFF1381 at 237.632 kb on + strand, within GFF1381 at 237.633 kb on - strand, within GFF1381 at 237.925 kb on - strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.936 kb on - strand at 237.936 kb on - strand at 238.231 kb on + strand, within GFF1382 at 238.232 kb on - strand, within GFF1382 at 238.330 kb on + strand, within GFF1382 at 238.370 kb on - strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.376 kb on - strand, within GFF1382 at 239.858 kb on + strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 237,552 - GFF1381 0.26 +1.0 237,632 + GFF1381 0.42 -0.6 237,632 + GFF1381 0.42 -0.0 237,633 - GFF1381 0.42 -0.8 237,925 - +4.3 237,935 + -0.9 237,935 + -0.2 237,935 + -0.1 237,935 + +0.1 237,935 + -0.1 237,936 - +0.0 237,936 - -0.4 238,231 + GFF1382 0.47 -0.2 238,232 - GFF1382 0.47 -1.0 238,330 + GFF1382 0.68 -0.7 238,370 - GFF1382 0.77 +2.2 238,375 + GFF1382 0.78 -0.4 238,375 + GFF1382 0.78 -0.8 238,375 + GFF1382 0.78 +0.4 238,375 + GFF1382 0.78 +2.2 238,375 + GFF1382 0.78 -0.7 238,376 - GFF1382 0.78 +0.8 239,858 + GFF1385 0.73 -0.1 239,859 - GFF1385 0.73 -0.3 239,859 - GFF1385 0.73 -0.6 239,859 - GFF1385 0.73 -0.6 239,859 - GFF1385 0.73 -0.2
Or see this region's nucleotide sequence