Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1366 and GFF1367 are separated by 7 nucleotides GFF1367 and GFF1368 are separated by 65 nucleotides GFF1368 and GFF1369 overlap by 4 nucleotides
GFF1366 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 221,875 to 222,849
GFF1366
GFF1367 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 222,857 to 223,768
GFF1367
GFF1368 - Putative gluthatione transporter,solute-binding component, at 223,834 to 225,420
GFF1368
GFF1369 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 225,417 to 226,700
GFF1369
Position (kb) 223
224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 222.978 kb on + strand, within GFF1367 at 222.978 kb on + strand, within GFF1367 at 222.978 kb on + strand, within GFF1367 at 222.978 kb on + strand, within GFF1367 at 222.978 kb on + strand, within GFF1367 at 222.979 kb on - strand, within GFF1367 at 222.979 kb on - strand, within GFF1367 at 222.979 kb on - strand, within GFF1367 at 223.185 kb on + strand, within GFF1367 at 223.185 kb on + strand, within GFF1367 at 223.185 kb on + strand, within GFF1367 at 223.185 kb on + strand, within GFF1367 at 223.185 kb on + strand, within GFF1367 at 223.186 kb on - strand, within GFF1367 at 223.186 kb on - strand, within GFF1367 at 223.186 kb on - strand, within GFF1367 at 223.186 kb on - strand, within GFF1367 at 223.233 kb on + strand, within GFF1367 at 223.233 kb on + strand, within GFF1367 at 223.234 kb on - strand, within GFF1367 at 223.234 kb on - strand, within GFF1367 at 223.500 kb on + strand, within GFF1367 at 223.500 kb on + strand, within GFF1367 at 223.501 kb on - strand, within GFF1367 at 223.501 kb on - strand, within GFF1367 at 223.836 kb on - strand at 224.168 kb on + strand, within GFF1368 at 224.168 kb on + strand, within GFF1368 at 224.168 kb on + strand, within GFF1368 at 224.168 kb on + strand, within GFF1368 at 224.168 kb on + strand, within GFF1368 at 224.169 kb on - strand, within GFF1368 at 224.169 kb on - strand, within GFF1368 at 224.169 kb on - strand, within GFF1368 at 224.169 kb on - strand, within GFF1368 at 224.204 kb on + strand, within GFF1368 at 224.204 kb on + strand, within GFF1368 at 224.204 kb on + strand, within GFF1368 at 224.204 kb on + strand, within GFF1368 at 224.204 kb on + strand, within GFF1368 at 224.205 kb on - strand, within GFF1368 at 224.205 kb on - strand, within GFF1368 at 224.205 kb on - strand, within GFF1368 at 224.205 kb on - strand, within GFF1368 at 224.205 kb on - strand, within GFF1368 at 224.205 kb on - strand, within GFF1368 at 224.298 kb on - strand, within GFF1368 at 224.384 kb on + strand, within GFF1368 at 224.384 kb on + strand, within GFF1368 at 224.385 kb on - strand, within GFF1368 at 224.507 kb on + strand, within GFF1368 at 224.507 kb on + strand, within GFF1368 at 224.564 kb on + strand, within GFF1368 at 224.750 kb on + strand, within GFF1368 at 224.750 kb on + strand, within GFF1368 at 224.750 kb on + strand, within GFF1368 at 224.751 kb on - strand, within GFF1368 at 224.789 kb on + strand, within GFF1368 at 224.789 kb on + strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 225.056 kb on + strand, within GFF1368 at 225.056 kb on + strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.254 kb on + strand, within GFF1368 at 225.254 kb on + strand, within GFF1368 at 225.255 kb on - strand, within GFF1368 at 225.559 kb on + strand, within GFF1369 at 225.560 kb on - strand, within GFF1369 at 225.623 kb on - strand, within GFF1369 at 225.773 kb on - strand, within GFF1369 at 225.784 kb on + strand, within GFF1369 at 225.784 kb on + strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 226.315 kb on + strand, within GFF1369 at 226.315 kb on + strand, within GFF1369 at 226.316 kb on - strand, within GFF1369
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 222,978 + GFF1367 0.13 +1.6 222,978 + GFF1367 0.13 -0.0 222,978 + GFF1367 0.13 +1.4 222,978 + GFF1367 0.13 -0.2 222,978 + GFF1367 0.13 -1.0 222,979 - GFF1367 0.13 -1.3 222,979 - GFF1367 0.13 +0.2 222,979 - GFF1367 0.13 -1.2 223,185 + GFF1367 0.36 -0.6 223,185 + GFF1367 0.36 -0.3 223,185 + GFF1367 0.36 -0.0 223,185 + GFF1367 0.36 -0.4 223,185 + GFF1367 0.36 +0.3 223,186 - GFF1367 0.36 -0.9 223,186 - GFF1367 0.36 -1.4 223,186 - GFF1367 0.36 +0.8 223,186 - GFF1367 0.36 -0.6 223,233 + GFF1367 0.41 +0.3 223,233 + GFF1367 0.41 -1.4 223,234 - GFF1367 0.41 +0.4 223,234 - GFF1367 0.41 +1.0 223,500 + GFF1367 0.71 +0.8 223,500 + GFF1367 0.71 -2.2 223,501 - GFF1367 0.71 +0.4 223,501 - GFF1367 0.71 -0.6 223,836 - -0.2 224,168 + GFF1368 0.21 +0.6 224,168 + GFF1368 0.21 -1.6 224,168 + GFF1368 0.21 -2.2 224,168 + GFF1368 0.21 -0.6 224,168 + GFF1368 0.21 -0.9 224,169 - GFF1368 0.21 -1.7 224,169 - GFF1368 0.21 -2.0 224,169 - GFF1368 0.21 +0.1 224,169 - GFF1368 0.21 -0.3 224,204 + GFF1368 0.23 -1.1 224,204 + GFF1368 0.23 -0.4 224,204 + GFF1368 0.23 -0.3 224,204 + GFF1368 0.23 -1.8 224,204 + GFF1368 0.23 -1.4 224,205 - GFF1368 0.23 -0.4 224,205 - GFF1368 0.23 +0.2 224,205 - GFF1368 0.23 +4.2 224,205 - GFF1368 0.23 -1.0 224,205 - GFF1368 0.23 -1.1 224,205 - GFF1368 0.23 -0.6 224,298 - GFF1368 0.29 -1.3 224,384 + GFF1368 0.35 -0.8 224,384 + GFF1368 0.35 -0.4 224,385 - GFF1368 0.35 +0.6 224,507 + GFF1368 0.42 -1.4 224,507 + GFF1368 0.42 +1.4 224,564 + GFF1368 0.46 -1.0 224,750 + GFF1368 0.58 +2.3 224,750 + GFF1368 0.58 -1.4 224,750 + GFF1368 0.58 -0.4 224,751 - GFF1368 0.58 -0.4 224,789 + GFF1368 0.60 -1.2 224,789 + GFF1368 0.60 -1.2 224,790 - GFF1368 0.60 +0.7 224,790 - GFF1368 0.60 -2.5 224,790 - GFF1368 0.60 -0.6 224,790 - GFF1368 0.60 +0.2 224,790 - GFF1368 0.60 -0.2 225,056 + GFF1368 0.77 -0.2 225,056 + GFF1368 0.77 -0.8 225,057 - GFF1368 0.77 -0.4 225,057 - GFF1368 0.77 -1.6 225,057 - GFF1368 0.77 -1.4 225,057 - GFF1368 0.77 -0.8 225,057 - GFF1368 0.77 -1.6 225,254 + GFF1368 0.89 +2.5 225,254 + GFF1368 0.89 -1.2 225,255 - GFF1368 0.90 -1.4 225,559 + GFF1369 0.11 -0.4 225,560 - GFF1369 0.11 +0.2 225,623 - GFF1369 0.16 +1.2 225,773 - GFF1369 0.28 -2.1 225,784 + GFF1369 0.29 +0.0 225,784 + GFF1369 0.29 -0.3 225,785 - GFF1369 0.29 +1.2 225,785 - GFF1369 0.29 +1.7 225,785 - GFF1369 0.29 -0.6 225,785 - GFF1369 0.29 +0.5 226,315 + GFF1369 0.70 +0.3 226,315 + GFF1369 0.70 -2.5 226,316 - GFF1369 0.70 +0.8
Or see this region's nucleotide sequence