Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1244

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1243 and GFF1244 are separated by 41 nucleotidesGFF1244 and GFF1245 overlap by 4 nucleotidesGFF1245 and GFF1246 are separated by 13 nucleotidesGFF1246 and GFF1247 overlap by 4 nucleotides GFF1243 - Cardiolipin synthetase (EC 2.7.8.-), at 102,819 to 104,084 GFF1243 GFF1244 - Endonuclease/exonuclease/phosphatase, at 104,126 to 104,854 GFF1244 GFF1245 - Dihydroneopterin triphosphate pyrophosphohydolase type 2, at 104,851 to 105,306 GFF1245 GFF1246 - hypothetical protein, at 105,320 to 105,607 GFF1246 GFF1247 - Probable transmembrane protein, at 105,604 to 105,990 GFF1247 Position (kb) 104 105Strain fitness (log2 ratio) -1 0 1 2at 103.153 kb on + strand, within GFF1243at 103.153 kb on + strand, within GFF1243at 103.153 kb on + strand, within GFF1243at 103.279 kb on + strand, within GFF1243at 103.279 kb on + strand, within GFF1243at 103.279 kb on + strand, within GFF1243at 103.280 kb on - strand, within GFF1243at 103.331 kb on - strand, within GFF1243at 103.429 kb on + strand, within GFF1243at 103.430 kb on - strand, within GFF1243at 103.813 kb on + strand, within GFF1243at 103.813 kb on + strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.814 kb on - strand, within GFF1243at 103.978 kb on + strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.978 kb on + strandat 103.979 kb on - strandat 103.979 kb on - strandat 103.979 kb on - strandat 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.265 kb on + strand, within GFF1244at 104.397 kb on + strand, within GFF1244at 104.397 kb on + strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.398 kb on - strand, within GFF1244at 104.472 kb on + strand, within GFF1244at 104.623 kb on - strand, within GFF1244at 104.634 kb on + strand, within GFF1244at 104.635 kb on - strand, within GFF1244at 104.652 kb on + strand, within GFF1244at 104.652 kb on + strand, within GFF1244at 104.653 kb on - strand, within GFF1244at 104.829 kb on + strandat 104.829 kb on + strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 104.830 kb on - strandat 105.051 kb on - strand, within GFF1245at 105.051 kb on - strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.071 kb on + strand, within GFF1245at 105.072 kb on - strand, within GFF1245at 105.072 kb on - strand, within GFF1245at 105.080 kb on + strand, within GFF1245at 105.080 kb on + strand, within GFF1245at 105.080 kb on + strand, within GFF1245at 105.081 kb on - strand, within GFF1245at 105.233 kb on + strand, within GFF1245at 105.677 kb on + strand, within GFF1247at 105.677 kb on + strand, within GFF1247at 105.677 kb on + strand, within GFF1247at 105.677 kb on + strand, within GFF1247at 105.677 kb on + strand, within GFF1247at 105.677 kb on + strand, within GFF1247at 105.678 kb on - strand, within GFF1247at 105.678 kb on - strand, within GFF1247at 105.678 kb on - strand, within GFF1247at 105.678 kb on - strand, within GFF1247at 105.678 kb on - strand, within GFF1247at 105.678 kb on - strand, within GFF1247at 105.678 kb on - strand, within GFF1247at 105.718 kb on + strand, within GFF1247at 105.718 kb on + strand, within GFF1247at 105.854 kb on + strand, within GFF1247at 105.854 kb on + strand, within GFF1247at 105.854 kb on + strand, within GFF1247at 105.854 kb on + strand, within GFF1247at 105.854 kb on + strand, within GFF1247

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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103,153 + GFF1243 0.26 -0.5
103,153 + GFF1243 0.26 +0.3
103,153 + GFF1243 0.26 -0.4
103,279 + GFF1243 0.36 +0.2
103,279 + GFF1243 0.36 -0.3
103,279 + GFF1243 0.36 +0.4
103,280 - GFF1243 0.36 -0.5
103,331 - GFF1243 0.40 +2.6
103,429 + GFF1243 0.48 +0.6
103,430 - GFF1243 0.48 -1.0
103,813 + GFF1243 0.79 +0.7
103,813 + GFF1243 0.79 -0.2
103,814 - GFF1243 0.79 -0.4
103,814 - GFF1243 0.79 -0.2
103,814 - GFF1243 0.79 +1.3
103,814 - GFF1243 0.79 -0.4
103,814 - GFF1243 0.79 +0.2
103,978 + -0.0
103,978 + -0.6
103,978 + -0.5
103,978 + -0.0
103,978 + -0.6
103,979 - -0.5
103,979 - -0.2
103,979 - -0.2
104,265 + GFF1244 0.19 +0.8
104,265 + GFF1244 0.19 +2.5
104,265 + GFF1244 0.19 +0.4
104,265 + GFF1244 0.19 -0.4
104,265 + GFF1244 0.19 +2.7
104,397 + GFF1244 0.37 +0.3
104,397 + GFF1244 0.37 +0.0
104,398 - GFF1244 0.37 -0.2
104,398 - GFF1244 0.37 +2.5
104,398 - GFF1244 0.37 +0.6
104,398 - GFF1244 0.37 +0.4
104,472 + GFF1244 0.47 +0.5
104,623 - GFF1244 0.68 -0.0
104,634 + GFF1244 0.70 -1.3
104,635 - GFF1244 0.70 +1.4
104,652 + GFF1244 0.72 +0.8
104,652 + GFF1244 0.72 +0.3
104,653 - GFF1244 0.72 -0.4
104,829 + +0.4
104,829 + -0.1
104,830 - -1.4
104,830 - +0.4
104,830 - +1.1
104,830 - +1.0
104,830 - -0.2
104,830 - -1.3
104,830 - +0.2
105,051 - GFF1245 0.44 -0.0
105,051 - GFF1245 0.44 +0.0
105,071 + GFF1245 0.48 -1.4
105,071 + GFF1245 0.48 -1.7
105,071 + GFF1245 0.48 -0.8
105,071 + GFF1245 0.48 +0.2
105,072 - GFF1245 0.48 -0.1
105,072 - GFF1245 0.48 -0.4
105,080 + GFF1245 0.50 +0.2
105,080 + GFF1245 0.50 -1.2
105,080 + GFF1245 0.50 +0.5
105,081 - GFF1245 0.50 -1.0
105,233 + GFF1245 0.84 -0.4
105,677 + GFF1247 0.19 +1.4
105,677 + GFF1247 0.19 -0.8
105,677 + GFF1247 0.19 +0.1
105,677 + GFF1247 0.19 +0.4
105,677 + GFF1247 0.19 -0.7
105,677 + GFF1247 0.19 +0.6
105,678 - GFF1247 0.19 +0.2
105,678 - GFF1247 0.19 +1.1
105,678 - GFF1247 0.19 -1.7
105,678 - GFF1247 0.19 -0.5
105,678 - GFF1247 0.19 -0.2
105,678 - GFF1247 0.19 +1.0
105,678 - GFF1247 0.19 -0.8
105,718 + GFF1247 0.29 -0.3
105,718 + GFF1247 0.29 +0.5
105,854 + GFF1247 0.65 -0.2
105,854 + GFF1247 0.65 -0.1
105,854 + GFF1247 0.65 -0.5
105,854 + GFF1247 0.65 -0.3
105,854 + GFF1247 0.65 +0.8

Or see this region's nucleotide sequence