Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1209 and GFF1210 are separated by 9 nucleotides GFF1210 and GFF1211 are separated by 113 nucleotides GFF1211 and GFF1212 are separated by 59 nucleotides GFF1212 and GFF1213 are separated by 12 nucleotides
GFF1209 - Probable transmembrane protein, at 73,624 to 74,364
GFF1209
GFF1210 - Probable lipoprotein, at 74,374 to 74,886
GFF1210
GFF1211 - Sulfate permease, at 75,000 to 76,643
GFF1211
GFF1212 - FIG01197990: hypothetical protein, at 76,703 to 76,915
GFF1212
GFF1213 - Segregation and condensation protein A, at 76,928 to 77,776
GFF1213
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.146 kb on + strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.147 kb on - strand, within GFF1209 at 74.489 kb on + strand, within GFF1210 at 74.490 kb on - strand, within GFF1210 at 74.490 kb on - strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.501 kb on + strand, within GFF1210 at 74.502 kb on - strand, within GFF1210 at 74.525 kb on + strand, within GFF1210 at 74.666 kb on + strand, within GFF1210 at 74.667 kb on - strand, within GFF1210 at 74.667 kb on - strand, within GFF1210 at 74.667 kb on - strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.696 kb on + strand, within GFF1210 at 74.697 kb on - strand, within GFF1210 at 74.702 kb on + strand, within GFF1210 at 74.702 kb on + strand, within GFF1210 at 74.703 kb on - strand, within GFF1210 at 74.703 kb on - strand, within GFF1210 at 74.934 kb on - strand at 74.934 kb on - strand at 74.989 kb on - strand at 75.063 kb on + strand at 75.063 kb on + strand at 75.063 kb on + strand at 75.064 kb on - strand at 75.064 kb on - strand at 75.274 kb on - strand, within GFF1211 at 75.381 kb on + strand, within GFF1211 at 75.382 kb on - strand, within GFF1211 at 75.382 kb on - strand, within GFF1211 at 75.382 kb on - strand, within GFF1211 at 76.113 kb on + strand, within GFF1211 at 76.113 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.374 kb on + strand, within GFF1211 at 76.375 kb on - strand, within GFF1211 at 76.375 kb on - strand, within GFF1211 at 76.375 kb on - strand, within GFF1211 at 76.384 kb on - strand, within GFF1211 at 76.889 kb on + strand, within GFF1212
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 74,146 + GFF1209 0.70 -1.1 74,146 + GFF1209 0.70 -0.9 74,146 + GFF1209 0.70 -0.5 74,146 + GFF1209 0.70 +0.7 74,146 + GFF1209 0.70 +1.1 74,146 + GFF1209 0.70 -0.3 74,146 + GFF1209 0.70 +0.9 74,147 - GFF1209 0.71 +0.6 74,147 - GFF1209 0.71 -0.6 74,147 - GFF1209 0.71 -0.6 74,147 - GFF1209 0.71 +2.1 74,489 + GFF1210 0.22 +0.4 74,490 - GFF1210 0.23 -0.2 74,490 - GFF1210 0.23 -0.0 74,501 + GFF1210 0.25 +3.0 74,501 + GFF1210 0.25 -1.1 74,501 + GFF1210 0.25 -0.9 74,502 - GFF1210 0.25 -0.1 74,525 + GFF1210 0.29 +0.4 74,666 + GFF1210 0.57 +1.4 74,667 - GFF1210 0.57 -0.0 74,667 - GFF1210 0.57 -0.2 74,667 - GFF1210 0.57 +0.9 74,696 + GFF1210 0.63 +0.4 74,696 + GFF1210 0.63 -0.1 74,696 + GFF1210 0.63 -0.4 74,696 + GFF1210 0.63 +0.3 74,696 + GFF1210 0.63 -0.0 74,697 - GFF1210 0.63 -0.3 74,702 + GFF1210 0.64 +1.4 74,702 + GFF1210 0.64 +0.5 74,703 - GFF1210 0.64 -0.4 74,703 - GFF1210 0.64 -0.7 74,934 - +1.7 74,934 - -0.4 74,989 - +1.4 75,063 + +0.2 75,063 + -0.2 75,063 + +0.4 75,064 - +1.5 75,064 - -2.0 75,274 - GFF1211 0.17 +3.8 75,381 + GFF1211 0.23 -0.6 75,382 - GFF1211 0.23 +4.0 75,382 - GFF1211 0.23 -1.4 75,382 - GFF1211 0.23 -2.0 76,113 + GFF1211 0.68 +2.8 76,113 + GFF1211 0.68 -0.4 76,374 + GFF1211 0.84 -0.0 76,374 + GFF1211 0.84 +1.6 76,374 + GFF1211 0.84 -0.1 76,374 + GFF1211 0.84 +0.9 76,374 + GFF1211 0.84 -0.2 76,374 + GFF1211 0.84 +0.7 76,374 + GFF1211 0.84 +0.3 76,374 + GFF1211 0.84 -0.5 76,374 + GFF1211 0.84 +1.4 76,374 + GFF1211 0.84 -0.7 76,375 - GFF1211 0.84 -0.6 76,375 - GFF1211 0.84 +0.4 76,375 - GFF1211 0.84 -0.8 76,384 - GFF1211 0.84 +0.8 76,889 + GFF1212 0.87 -0.2
Or see this region's nucleotide sequence