Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1198 and GFF1199 overlap by 41 nucleotides GFF1199 and GFF1200 are separated by 2 nucleotides GFF1200 and GFF1201 are separated by 202 nucleotides
GFF1198 - Iron-sulfur cluster-binding protein, at 57,762 to 59,831
GFF1198
GFF1199 - hypothetical protein, at 59,791 to 60,390
GFF1199
GFF1200 - FIG00431662: hypothetical protein, at 60,393 to 61,025
GFF1200
GFF1201 - Benzoyl-CoA oxygenase component A, at 61,228 to 62,529
GFF1201
Position (kb) 60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 59.500 kb on + strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.501 kb on - strand, within GFF1198 at 59.565 kb on - strand, within GFF1198 at 60.056 kb on + strand, within GFF1199 at 60.056 kb on + strand, within GFF1199 at 60.057 kb on - strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.068 kb on + strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.069 kb on - strand, within GFF1199 at 60.095 kb on + strand, within GFF1199 at 60.096 kb on - strand, within GFF1199 at 60.173 kb on + strand, within GFF1199 at 60.173 kb on + strand, within GFF1199 at 60.174 kb on - strand, within GFF1199 at 60.514 kb on + strand, within GFF1200 at 60.514 kb on + strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.617 kb on - strand, within GFF1200 at 60.730 kb on + strand, within GFF1200 at 60.730 kb on + strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 60.731 kb on - strand, within GFF1200 at 61.010 kb on + strand at 61.010 kb on + strand at 61.010 kb on + strand at 61.010 kb on + strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.011 kb on - strand at 61.025 kb on + strand at 61.025 kb on + strand at 61.041 kb on + strand at 61.041 kb on + strand at 61.042 kb on - strand at 61.042 kb on - strand at 61.042 kb on - strand at 61.232 kb on + strand at 61.233 kb on - strand at 61.364 kb on + strand, within GFF1201 at 61.364 kb on + strand, within GFF1201 at 61.365 kb on - strand, within GFF1201 at 61.365 kb on - strand, within GFF1201 at 61.436 kb on + strand, within GFF1201 at 61.436 kb on + strand, within GFF1201 at 61.436 kb on + strand, within GFF1201 at 61.437 kb on - strand, within GFF1201 at 61.520 kb on + strand, within GFF1201 at 61.521 kb on - strand, within GFF1201 at 61.698 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.751 kb on + strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.752 kb on - strand, within GFF1201 at 61.794 kb on - strand, within GFF1201 at 61.868 kb on + strand, within GFF1201 at 61.992 kb on - strand, within GFF1201
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 59,500 + GFF1198 0.84 -0.9 59,501 - GFF1198 0.84 +0.0 59,501 - GFF1198 0.84 -1.1 59,501 - GFF1198 0.84 +3.9 59,501 - GFF1198 0.84 +0.4 59,565 - GFF1198 0.87 +0.1 60,056 + GFF1199 0.44 -1.5 60,056 + GFF1199 0.44 -0.2 60,057 - GFF1199 0.44 -0.2 60,068 + GFF1199 0.46 +0.6 60,068 + GFF1199 0.46 +2.0 60,068 + GFF1199 0.46 +0.2 60,068 + GFF1199 0.46 -0.5 60,068 + GFF1199 0.46 -2.0 60,069 - GFF1199 0.46 +0.4 60,069 - GFF1199 0.46 -0.3 60,069 - GFF1199 0.46 -0.6 60,069 - GFF1199 0.46 +0.4 60,095 + GFF1199 0.51 -0.1 60,096 - GFF1199 0.51 -0.4 60,173 + GFF1199 0.64 -1.3 60,173 + GFF1199 0.64 -1.5 60,174 - GFF1199 0.64 -0.8 60,514 + GFF1200 0.19 -0.2 60,514 + GFF1200 0.19 -0.0 60,617 - GFF1200 0.35 -0.3 60,617 - GFF1200 0.35 -0.3 60,617 - GFF1200 0.35 +2.2 60,730 + GFF1200 0.53 -0.6 60,730 + GFF1200 0.53 -0.2 60,731 - GFF1200 0.53 -0.8 60,731 - GFF1200 0.53 +0.0 60,731 - GFF1200 0.53 -0.7 61,010 + -0.6 61,010 + -0.0 61,010 + -0.0 61,010 + +0.3 61,011 - +1.4 61,011 - +0.1 61,011 - -0.4 61,011 - -1.0 61,011 - -0.4 61,025 + +0.4 61,025 + +0.4 61,041 + +0.0 61,041 + -0.2 61,042 - -1.8 61,042 - -0.0 61,042 - -0.0 61,232 + +0.9 61,233 - -0.6 61,364 + GFF1201 0.10 +1.4 61,364 + GFF1201 0.10 +0.2 61,365 - GFF1201 0.11 +0.1 61,365 - GFF1201 0.11 -0.1 61,436 + GFF1201 0.16 -0.4 61,436 + GFF1201 0.16 +0.0 61,436 + GFF1201 0.16 +0.1 61,437 - GFF1201 0.16 -0.3 61,520 + GFF1201 0.22 -0.3 61,521 - GFF1201 0.23 +0.1 61,698 + GFF1201 0.36 +0.4 61,751 + GFF1201 0.40 -0.2 61,751 + GFF1201 0.40 +0.1 61,751 + GFF1201 0.40 +0.0 61,751 + GFF1201 0.40 +0.1 61,751 + GFF1201 0.40 -0.1 61,751 + GFF1201 0.40 -0.3 61,751 + GFF1201 0.40 -0.4 61,751 + GFF1201 0.40 +0.2 61,752 - GFF1201 0.40 -0.3 61,752 - GFF1201 0.40 +2.1 61,752 - GFF1201 0.40 +0.0 61,752 - GFF1201 0.40 -0.7 61,752 - GFF1201 0.40 +0.0 61,794 - GFF1201 0.43 +2.8 61,868 + GFF1201 0.49 -0.1 61,992 - GFF1201 0.59 +0.1
Or see this region's nucleotide sequence