Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1173

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
29,479	+				+0.7
29,480	-				+0.8
29,480	-				+0.4
29,576	+		GFF1172	0.21	+1.0
29,576	+		GFF1172	0.21	+0.4
29,577	-		GFF1172	0.22	+0.4
29,577	-		GFF1172	0.22	-1.6
29,577	-		GFF1172	0.22	+0.6
29,577	-		GFF1172	0.22	-0.2
29,587	+		GFF1172	0.23	-0.6
29,587	+		GFF1172	0.23	-0.5
29,587	+		GFF1172	0.23	-0.2
29,588	-		GFF1172	0.23	+3.0
29,603	+		GFF1172	0.25	-0.2
29,603	+		GFF1172	0.25	+0.3
29,603	+		GFF1172	0.25	-0.4
29,638	+		GFF1172	0.29	-0.3
29,638	+		GFF1172	0.29	+0.0
29,721	+		GFF1172	0.40	+0.2
29,721	+		GFF1172	0.40	+0.6
29,722	-		GFF1172	0.40	+1.3
29,722	-		GFF1172	0.40	+0.6
29,722	-		GFF1172	0.40	+3.6
29,722	-		GFF1172	0.40	-1.0
29,736	+		GFF1172	0.42	+0.6
29,736	+		GFF1172	0.42	-0.1
29,736	+		GFF1172	0.42	-0.0
29,736	+		GFF1172	0.42	+0.1
29,737	-		GFF1172	0.42	-0.6
29,737	-		GFF1172	0.42	+0.1
29,737	-		GFF1172	0.42	-0.6
29,741	-		GFF1172	0.42	+0.1
29,741	-		GFF1172	0.42	-0.1
29,773	-		GFF1172	0.46	-0.6
29,773	-		GFF1172	0.46	+0.1
29,833	+		GFF1172	0.54	+0.7
29,834	-		GFF1172	0.54	-0.0
29,842	+		GFF1172	0.55	+0.1
29,842	+		GFF1172	0.55	-0.5
29,843	-		GFF1172	0.55	+0.6
29,908	+		GFF1172	0.63	-1.3
29,908	+		GFF1172	0.63	+1.0
29,908	+		GFF1172	0.63	-0.8
29,908	+		GFF1172	0.63	-0.6
29,908	+		GFF1172	0.63	-1.0
29,909	-		GFF1172	0.64	-0.5
30,012	+		GFF1172	0.77	-0.4
30,013	-		GFF1172	0.77	-0.2
30,016	+		GFF1172	0.77	+0.2
30,016	+		GFF1172	0.77	+1.1
30,016	+		GFF1172	0.77	+1.9
30,016	+		GFF1172	0.77	+0.8
30,017	-		GFF1172	0.77	+0.4
30,017	-		GFF1172	0.77	+2.6
30,017	-		GFF1172	0.77	+1.4
30,017	-		GFF1172	0.77	+0.5
30,019	+		GFF1172	0.77	+0.0
30,019	+		GFF1172	0.77	+0.3
30,020	-		GFF1172	0.78	-0.5
30,061	+		GFF1172	0.83	+1.1
30,061	+		GFF1172	0.83	-0.1
30,061	+		GFF1172	0.83	-0.4
30,061	+		GFF1172	0.83	-1.3
30,062	-		GFF1172	0.83	+0.2
30,062	-		GFF1172	0.83	-0.1
30,062	-		GFF1172	0.83	+0.8
30,062	-		GFF1172	0.83	-0.1
30,062	-		GFF1172	0.83	+0.5
30,067	+		GFF1172	0.83	+0.4
30,067	+		GFF1172	0.83	-1.4
30,067	+		GFF1172	0.83	+0.7
30,067	+		GFF1172	0.83	-1.4
30,067	+		GFF1172	0.83	-0.4
30,068	-		GFF1172	0.84	+0.3
30,068	-		GFF1172	0.84	-0.6
30,068	-		GFF1172	0.84	-0.4
30,068	-		GFF1172	0.84	+0.0
30,068	-		GFF1172	0.84	+0.0
30,135	-				-0.4
30,226	-				+0.2
30,232	+				+0.1
30,232	+				-0.0
30,232	+				+2.4
30,233	-				+0.8
30,233	-				-0.8
30,233	-				-0.6
30,233	-				+0.1
30,236	+				-0.7
30,236	+				-0.6
30,236	+				+1.7
30,237	-				+0.5
30,237	-				-1.0
30,237	-				-0.7
30,237	-				+0.2
30,237	-				+1.4
30,260	-				+0.1
30,271	+				+0.1
30,271	+				+0.3
30,271	+				+0.0
30,271	+				+1.1
30,272	-				-1.8
30,282	+				-0.3
30,283	-				-0.2
30,324	-				-0.6
30,324	-				-0.4
30,553	+		GFF1173	0.11	-1.1
30,553	+		GFF1173	0.11	-0.2
30,553	+		GFF1173	0.11	+1.4
30,553	+		GFF1173	0.11	+0.0
30,553	+		GFF1173	0.11	+1.2
30,554	-		GFF1173	0.11	+0.9
30,554	-		GFF1173	0.11	-0.3
30,664	+		GFF1173	0.18	-0.6
30,665	-		GFF1173	0.18	+3.2
30,665	-		GFF1173	0.18	+0.4
30,721	+		GFF1173	0.21	+0.7
30,825	+		GFF1173	0.28	-2.2
30,825	+		GFF1173	0.28	+0.4
30,889	+		GFF1173	0.32	+0.9
30,889	+		GFF1173	0.32	-1.2
30,889	+		GFF1173	0.32	-0.3
30,890	-		GFF1173	0.32	-0.4
30,890	-		GFF1173	0.32	-0.2
30,961	+		GFF1173	0.36	-0.5
30,962	-		GFF1173	0.36	-1.0
30,962	-		GFF1173	0.36	+1.5
30,968	-		GFF1173	0.36	-0.3
30,968	-		GFF1173	0.36	+1.0
31,141	+		GFF1173	0.47	-0.6
31,141	+		GFF1173	0.47	+0.1
31,141	+		GFF1173	0.47	+0.8
31,141	+		GFF1173	0.47	-0.4
31,141	+		GFF1173	0.47	-1.0
31,141	+		GFF1173	0.47	-0.3
31,142	-		GFF1173	0.47	-1.0
31,142	-		GFF1173	0.47	-0.5
31,142	-		GFF1173	0.47	+1.1
31,142	-		GFF1173	0.47	-0.6
31,198	-		GFF1173	0.50	-1.1
31,236	+		GFF1173	0.53	+0.0
31,236	+		GFF1173	0.53	-1.2
31,236	+		GFF1173	0.53	+2.1
31,236	+		GFF1173	0.53	+0.4
31,237	-		GFF1173	0.53	-0.2
31,237	-		GFF1173	0.53	+0.7
31,237	-		GFF1173	0.53	-0.1
31,237	-		GFF1173	0.53	+1.0
31,267	+		GFF1173	0.55	-0.9
31,268	-		GFF1173	0.55	+3.0
31,268	-		GFF1173	0.55	+0.5
31,444	+		GFF1173	0.65	-0.0
31,444	+		GFF1173	0.65	-0.7
31,445	-		GFF1173	0.65	+1.4
31,447	+		GFF1173	0.65	+0.8
31,448	-		GFF1173	0.66	-0.2
31,448	-		GFF1173	0.66	+0.3
31,472	+		GFF1173	0.67	-1.0
31,473	-		GFF1173	0.67	-1.2
31,473	-		GFF1173	0.67	-0.2
31,480	+		GFF1173	0.67	-1.4
31,480	+		GFF1173	0.67	-1.8
31,480	+		GFF1173	0.67	+0.8
31,576	+		GFF1173	0.73	+1.4
31,577	-		GFF1173	0.73	-0.3
31,577	-		GFF1173	0.73	+2.9
31,579	+		GFF1173	0.73	+0.4
31,579	+		GFF1173	0.73	+0.5
31,619	-		GFF1173	0.76	+0.5
31,619	-		GFF1173	0.76	+0.8
31,619	-		GFF1173	0.76	-0.5
31,619	-		GFF1173	0.76	-0.3
31,699	+		GFF1173	0.81	-0.6
31,699	+		GFF1173	0.81	-1.4
31,780	+		GFF1173	0.86	+0.6
31,781	-		GFF1173	0.86	-0.2
31,781	-		GFF1173	0.86	+0.5
31,781	-		GFF1173	0.86	+1.0
31,826	-		GFF1173	0.88	+0.6
31,826	-		GFF1173	0.88	-0.4
31,991	+				+1.0
31,992	-				+0.4
32,073	+				+1.4
32,251	+		GFF1174	0.19	-1.4
32,252	-		GFF1174	0.19	+1.4
32,252	-		GFF1174	0.19	+0.2
32,317	+		GFF1174	0.27	-0.0
32,318	-		GFF1174	0.27	-0.0
32,420	+		GFF1174	0.40	-0.6
32,481	+		GFF1174	0.48	+1.9
32,482	-		GFF1174	0.48	+0.4
32,482	-		GFF1174	0.48	-0.1
32,482	-		GFF1174	0.48	-0.2
32,485	+		GFF1174	0.48	-0.0
32,485	+		GFF1174	0.48	+0.3
32,486	-		GFF1174	0.48	+0.6
32,486	-		GFF1174	0.48	+1.4
32,748	+		GFF1174	0.81	-0.6
32,749	-		GFF1174	0.81	-0.2
32,749	-		GFF1174	0.81	-1.8
32,749	-		GFF1174	0.81	+0.5
32,806	+		GFF1174	0.88	-0.7
32,806	+		GFF1174	0.88	-1.4
32,806	+		GFF1174	0.88	-0.2
32,806	-		GFF1174	0.88	+0.4
32,807	-		GFF1174	0.88	-1.3
32,807	-		GFF1174	0.88	-0.7
32,968	+				-0.9