Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1037 and GFF1038 are separated by 249 nucleotides GFF1038 and GFF1039 are separated by 348 nucleotides GFF1039 and GFF1040 are separated by 182 nucleotides
GFF1037 - Esterase/lipase, at 776,171 to 776,971
GFF1037
GFF1038 - NADPH:quinone oxidoreductase, at 777,221 to 777,793
GFF1038
GFF1039 - putative membrane protein, at 778,142 to 778,567
GFF1039
GFF1040 - Transcriptional regulator, HxlR family, at 778,750 to 779,055
GFF1040
Position (kb) 777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.412 kb on + strand, within GFF1037 at 776.412 kb on + strand, within GFF1037 at 776.413 kb on - strand, within GFF1037 at 776.413 kb on - strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.505 kb on + strand, within GFF1037 at 776.609 kb on + strand, within GFF1037 at 777.176 kb on - strand at 777.282 kb on + strand, within GFF1038 at 777.282 kb on + strand, within GFF1038 at 777.282 kb on + strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.283 kb on - strand, within GFF1038 at 777.360 kb on + strand, within GFF1038 at 777.361 kb on - strand, within GFF1038 at 777.643 kb on - strand, within GFF1038 at 777.654 kb on + strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.655 kb on - strand, within GFF1038 at 777.783 kb on + strand at 777.783 kb on + strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.994 kb on - strand at 778.081 kb on + strand at 778.082 kb on - strand at 778.093 kb on - strand at 778.282 kb on - strand, within GFF1039 at 778.291 kb on - strand, within GFF1039 at 778.441 kb on + strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.617 kb on - strand at 778.617 kb on - strand at 778.622 kb on - strand at 778.665 kb on + strand at 778.665 kb on + strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.707 kb on - strand at 778.787 kb on - strand, within GFF1040 at 778.787 kb on - strand, within GFF1040
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 776,388 + GFF1037 0.27 -1.1 776,388 + GFF1037 0.27 -1.0 776,388 + GFF1037 0.27 -0.3 776,388 + GFF1037 0.27 -0.9 776,388 + GFF1037 0.27 -0.4 776,388 + GFF1037 0.27 +1.9 776,388 + GFF1037 0.27 +1.3 776,389 - GFF1037 0.27 +2.0 776,389 - GFF1037 0.27 +0.2 776,389 - GFF1037 0.27 +1.0 776,412 + GFF1037 0.30 -1.9 776,412 + GFF1037 0.30 -1.3 776,413 - GFF1037 0.30 +1.0 776,413 - GFF1037 0.30 -1.0 776,502 + GFF1037 0.41 -1.0 776,502 + GFF1037 0.41 -0.5 776,502 + GFF1037 0.41 -1.6 776,502 + GFF1037 0.41 -0.1 776,502 + GFF1037 0.41 +1.2 776,503 - GFF1037 0.41 -0.0 776,503 - GFF1037 0.41 -0.6 776,503 - GFF1037 0.41 -0.9 776,503 - GFF1037 0.41 +0.0 776,503 - GFF1037 0.41 -0.4 776,503 - GFF1037 0.41 -0.6 776,505 + GFF1037 0.42 -0.9 776,609 + GFF1037 0.55 -0.3 777,176 - +0.0 777,282 + GFF1038 0.11 +1.3 777,282 + GFF1038 0.11 -0.7 777,282 + GFF1038 0.11 -0.3 777,283 - GFF1038 0.11 -0.3 777,283 - GFF1038 0.11 -0.8 777,283 - GFF1038 0.11 -0.0 777,283 - GFF1038 0.11 -0.9 777,283 - GFF1038 0.11 -0.1 777,283 - GFF1038 0.11 -0.6 777,360 + GFF1038 0.24 -0.3 777,361 - GFF1038 0.24 -0.3 777,643 - GFF1038 0.74 -0.1 777,654 + GFF1038 0.76 +0.7 777,655 - GFF1038 0.76 -0.7 777,655 - GFF1038 0.76 -0.3 777,655 - GFF1038 0.76 +1.1 777,655 - GFF1038 0.76 -0.2 777,783 + -0.1 777,783 + +0.6 777,784 - -0.5 777,784 - -0.8 777,784 - +0.5 777,784 - +0.1 777,784 - -0.1 777,994 - -0.4 778,081 + +0.3 778,082 - +0.6 778,093 - +1.6 778,282 - GFF1039 0.33 +0.1 778,291 - GFF1039 0.35 +0.0 778,441 + GFF1039 0.70 +1.6 778,442 - GFF1039 0.70 +1.3 778,442 - GFF1039 0.70 +0.8 778,442 - GFF1039 0.70 +0.3 778,442 - GFF1039 0.70 +0.2 778,443 + GFF1039 0.71 -0.7 778,443 + GFF1039 0.71 -0.2 778,443 + GFF1039 0.71 +0.2 778,443 + GFF1039 0.71 +0.0 778,443 + GFF1039 0.71 -0.4 778,444 - GFF1039 0.71 -3.1 778,444 - GFF1039 0.71 +1.4 778,444 - GFF1039 0.71 -2.0 778,444 - GFF1039 0.71 -0.4 778,444 - GFF1039 0.71 -0.9 778,617 - -0.7 778,617 - -0.5 778,622 - -0.3 778,665 + -0.6 778,665 + -0.1 778,666 - +1.3 778,666 - -0.8 778,666 - -0.2 778,707 - -0.8 778,787 - GFF1040 0.12 +1.2 778,787 - GFF1040 0.12 -1.4
Or see this region's nucleotide sequence