Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1037

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1036 and GFF1037 are separated by 515 nucleotidesGFF1037 and GFF1038 are separated by 249 nucleotides GFF1036 - Guanylate kinase (EC 2.7.4.8), at 775,035 to 775,655 GFF1036 GFF1037 - Esterase/lipase, at 776,171 to 776,971 GFF1037 GFF1038 - NADPH:quinone oxidoreductase, at 777,221 to 777,793 GFF1038 Position (kb) 776 777Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 775.660 kb on - strandat 775.711 kb on + strandat 775.731 kb on + strandat 775.731 kb on + strandat 775.732 kb on - strandat 775.732 kb on - strandat 775.732 kb on - strandat 775.748 kb on + strandat 775.748 kb on + strandat 775.748 kb on + strandat 775.748 kb on + strandat 775.749 kb on - strandat 775.750 kb on + strandat 775.751 kb on - strandat 775.802 kb on + strandat 775.802 kb on + strandat 775.802 kb on + strandat 775.803 kb on - strandat 775.803 kb on - strandat 775.803 kb on - strandat 775.803 kb on - strandat 775.803 kb on - strandat 775.836 kb on + strandat 775.837 kb on - strandat 775.995 kb on + strandat 775.995 kb on + strandat 775.995 kb on + strandat 775.995 kb on + strandat 775.995 kb on + strandat 775.995 kb on + strandat 775.995 kb on + strandat 775.995 kb on + strandat 775.996 kb on - strandat 775.996 kb on - strandat 775.996 kb on - strandat 775.996 kb on - strandat 775.997 kb on + strandat 775.997 kb on + strandat 775.997 kb on + strandat 775.997 kb on + strandat 775.998 kb on - strandat 775.998 kb on - strandat 775.998 kb on - strandat 776.104 kb on + strandat 776.104 kb on + strandat 776.104 kb on + strandat 776.104 kb on + strandat 776.104 kb on + strandat 776.104 kb on + strandat 776.105 kb on + strandat 776.164 kb on + strandat 776.164 kb on + strandat 776.164 kb on + strandat 776.164 kb on + strandat 776.165 kb on - strandat 776.165 kb on - strandat 776.165 kb on - strandat 776.219 kb on + strandat 776.219 kb on + strandat 776.219 kb on + strandat 776.220 kb on - strandat 776.220 kb on - strandat 776.220 kb on - strandat 776.220 kb on - strandat 776.220 kb on - strandat 776.220 kb on - strandat 776.388 kb on + strand, within GFF1037at 776.388 kb on + strand, within GFF1037at 776.388 kb on + strand, within GFF1037at 776.388 kb on + strand, within GFF1037at 776.388 kb on + strand, within GFF1037at 776.388 kb on + strand, within GFF1037at 776.388 kb on + strand, within GFF1037at 776.389 kb on - strand, within GFF1037at 776.389 kb on - strand, within GFF1037at 776.389 kb on - strand, within GFF1037at 776.412 kb on + strand, within GFF1037at 776.412 kb on + strand, within GFF1037at 776.413 kb on - strand, within GFF1037at 776.413 kb on - strand, within GFF1037at 776.502 kb on + strand, within GFF1037at 776.502 kb on + strand, within GFF1037at 776.502 kb on + strand, within GFF1037at 776.502 kb on + strand, within GFF1037at 776.502 kb on + strand, within GFF1037at 776.503 kb on - strand, within GFF1037at 776.503 kb on - strand, within GFF1037at 776.503 kb on - strand, within GFF1037at 776.503 kb on - strand, within GFF1037at 776.503 kb on - strand, within GFF1037at 776.503 kb on - strand, within GFF1037at 776.505 kb on + strand, within GFF1037at 776.609 kb on + strand, within GFF1037at 777.176 kb on - strandat 777.282 kb on + strand, within GFF1038at 777.282 kb on + strand, within GFF1038at 777.282 kb on + strand, within GFF1038at 777.283 kb on - strand, within GFF1038at 777.283 kb on - strand, within GFF1038at 777.283 kb on - strand, within GFF1038at 777.283 kb on - strand, within GFF1038at 777.283 kb on - strand, within GFF1038at 777.283 kb on - strand, within GFF1038at 777.360 kb on + strand, within GFF1038at 777.361 kb on - strand, within GFF1038at 777.643 kb on - strand, within GFF1038at 777.654 kb on + strand, within GFF1038at 777.655 kb on - strand, within GFF1038at 777.655 kb on - strand, within GFF1038at 777.655 kb on - strand, within GFF1038at 777.655 kb on - strand, within GFF1038at 777.783 kb on + strandat 777.783 kb on + strandat 777.784 kb on - strandat 777.784 kb on - strandat 777.784 kb on - strandat 777.784 kb on - strandat 777.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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775,660 - +0.1
775,711 + -0.3
775,731 + -0.7
775,731 + -0.6
775,732 - -0.5
775,732 - -0.4
775,732 - +0.0
775,748 + -0.7
775,748 + -1.0
775,748 + -0.8
775,748 + -0.1
775,749 - -1.3
775,750 + +0.4
775,751 - -1.4
775,802 + -0.6
775,802 + -1.2
775,802 + -2.0
775,803 - -0.1
775,803 - +1.2
775,803 - -0.1
775,803 - -1.0
775,803 - +1.0
775,836 + -0.5
775,837 - +0.1
775,995 + +0.5
775,995 + -1.5
775,995 + -0.6
775,995 + -0.6
775,995 + +0.7
775,995 + +0.5
775,995 + -0.3
775,995 + -0.3
775,996 - +0.0
775,996 - -2.0
775,996 - +0.5
775,996 - -0.7
775,997 + -1.8
775,997 + -1.7
775,997 + -0.9
775,997 + -1.3
775,998 - +0.2
775,998 - -2.8
775,998 - +0.1
776,104 + -0.5
776,104 + -0.7
776,104 + -0.4
776,104 + -0.1
776,104 + -2.0
776,104 + +0.2
776,105 + -0.1
776,164 + +1.7
776,164 + +0.6
776,164 + -1.0
776,164 + -0.6
776,165 - -0.0
776,165 - -0.1
776,165 - +0.0
776,219 + -0.3
776,219 + -1.1
776,219 + -1.2
776,220 - -1.4
776,220 - +0.4
776,220 - +0.2
776,220 - -1.1
776,220 - -1.4
776,220 - +1.6
776,388 + GFF1037 0.27 -1.1
776,388 + GFF1037 0.27 -1.0
776,388 + GFF1037 0.27 -0.3
776,388 + GFF1037 0.27 -0.9
776,388 + GFF1037 0.27 -0.4
776,388 + GFF1037 0.27 +1.9
776,388 + GFF1037 0.27 +1.3
776,389 - GFF1037 0.27 +2.0
776,389 - GFF1037 0.27 +0.2
776,389 - GFF1037 0.27 +1.0
776,412 + GFF1037 0.30 -1.9
776,412 + GFF1037 0.30 -1.3
776,413 - GFF1037 0.30 +1.0
776,413 - GFF1037 0.30 -1.0
776,502 + GFF1037 0.41 -1.0
776,502 + GFF1037 0.41 -0.5
776,502 + GFF1037 0.41 -1.6
776,502 + GFF1037 0.41 -0.1
776,502 + GFF1037 0.41 +1.2
776,503 - GFF1037 0.41 -0.0
776,503 - GFF1037 0.41 -0.6
776,503 - GFF1037 0.41 -0.9
776,503 - GFF1037 0.41 +0.0
776,503 - GFF1037 0.41 -0.4
776,503 - GFF1037 0.41 -0.6
776,505 + GFF1037 0.42 -0.9
776,609 + GFF1037 0.55 -0.3
777,176 - +0.0
777,282 + GFF1038 0.11 +1.3
777,282 + GFF1038 0.11 -0.7
777,282 + GFF1038 0.11 -0.3
777,283 - GFF1038 0.11 -0.3
777,283 - GFF1038 0.11 -0.8
777,283 - GFF1038 0.11 -0.0
777,283 - GFF1038 0.11 -0.9
777,283 - GFF1038 0.11 -0.1
777,283 - GFF1038 0.11 -0.6
777,360 + GFF1038 0.24 -0.3
777,361 - GFF1038 0.24 -0.3
777,643 - GFF1038 0.74 -0.1
777,654 + GFF1038 0.76 +0.7
777,655 - GFF1038 0.76 -0.7
777,655 - GFF1038 0.76 -0.3
777,655 - GFF1038 0.76 +1.1
777,655 - GFF1038 0.76 -0.2
777,783 + -0.1
777,783 + +0.6
777,784 - -0.5
777,784 - -0.8
777,784 - +0.5
777,784 - +0.1
777,784 - -0.1

Or see this region's nucleotide sequence