Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1012 and GFF1013 overlap by 1 nucleotides GFF1013 and GFF1014 overlap by 4 nucleotides GFF1014 and GFF1015 overlap by 4 nucleotides GFF1015 and GFF1016 are separated by 87 nucleotides
GFF1012 - Benzoate transport, ATP binding protein, at 750,615 to 751,337
GFF1012
GFF1013 - Benzoate transport, ATPase component, at 751,337 to 752,098
GFF1013
GFF1014 - Benzoate transport, inner-membrane translocator precursor, at 752,095 to 753,087
GFF1014
GFF1015 - Benzoate transport, inner-membrane translocator, at 753,084 to 753,947
GFF1015
GFF1016 - Benzoate transport, extracellular ligand-binding receptor, at 754,035 to 755,222
GFF1016
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.356 kb on + strand at 751.356 kb on + strand at 751.356 kb on + strand at 751.357 kb on - strand at 752.235 kb on - strand, within GFF1014 at 752.402 kb on - strand, within GFF1014 at 752.529 kb on - strand, within GFF1014 at 752.558 kb on + strand, within GFF1014 at 752.559 kb on - strand, within GFF1014 at 752.633 kb on + strand, within GFF1014 at 752.633 kb on + strand, within GFF1014 at 752.720 kb on + strand, within GFF1014 at 752.867 kb on + strand, within GFF1014 at 752.868 kb on - strand, within GFF1014 at 752.868 kb on - strand, within GFF1014 at 753.139 kb on + strand at 753.180 kb on + strand, within GFF1015 at 753.472 kb on + strand, within GFF1015 at 753.472 kb on + strand, within GFF1015 at 753.635 kb on - strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.683 kb on - strand, within GFF1015 at 753.799 kb on + strand, within GFF1015 at 753.799 kb on + strand, within GFF1015 at 753.814 kb on + strand, within GFF1015 at 753.815 kb on - strand, within GFF1015 at 753.815 kb on - strand, within GFF1015 at 753.901 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 751,356 + -0.1 751,356 + -0.8 751,356 + -0.1 751,357 - -0.2 752,235 - GFF1014 0.14 -0.3 752,402 - GFF1014 0.31 +0.5 752,529 - GFF1014 0.44 -0.4 752,558 + GFF1014 0.47 -0.8 752,559 - GFF1014 0.47 +0.9 752,633 + GFF1014 0.54 -1.0 752,633 + GFF1014 0.54 -0.8 752,720 + GFF1014 0.63 +0.6 752,867 + GFF1014 0.78 -1.8 752,868 - GFF1014 0.78 -0.7 752,868 - GFF1014 0.78 -0.0 753,139 + -0.7 753,180 + GFF1015 0.11 +0.6 753,472 + GFF1015 0.45 +0.3 753,472 + GFF1015 0.45 +0.3 753,635 - GFF1015 0.64 -0.5 753,682 + GFF1015 0.69 -1.8 753,682 + GFF1015 0.69 -0.1 753,682 + GFF1015 0.69 -0.5 753,683 - GFF1015 0.69 +1.0 753,799 + GFF1015 0.83 +0.2 753,799 + GFF1015 0.83 +0.5 753,814 + GFF1015 0.84 +0.1 753,815 - GFF1015 0.85 -0.1 753,815 - GFF1015 0.85 -0.5 753,901 + +2.2
Or see this region's nucleotide sequence