Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1002 and GFF1003 are separated by 1 nucleotides GFF1003 and GFF1004 are separated by 30 nucleotides
GFF1002 - MmgE/PrpD family protein, at 740,548 to 741,960
GFF1002
GFF1003 - Enoyl-CoA hydratase (EC 4.2.1.17), at 741,962 to 742,723
GFF1003
GFF1004 - Transcriptional regulator, IclR family, at 742,754 to 743,629
GFF1004
Position (kb) 741
742
743 Strain fitness (log2 ratio) -2
-1
0
1
2 at 740.992 kb on + strand, within GFF1002 at 740.992 kb on + strand, within GFF1002 at 740.992 kb on + strand, within GFF1002 at 740.992 kb on + strand, within GFF1002 at 740.993 kb on - strand, within GFF1002 at 741.641 kb on + strand, within GFF1002 at 741.642 kb on - strand, within GFF1002 at 741.864 kb on - strand at 742.212 kb on + strand, within GFF1003 at 742.213 kb on - strand, within GFF1003 at 742.224 kb on + strand, within GFF1003 at 742.414 kb on - strand, within GFF1003 at 742.414 kb on - strand, within GFF1003 at 742.419 kb on + strand, within GFF1003 at 742.704 kb on + strand at 743.112 kb on + strand, within GFF1004 at 743.113 kb on - strand, within GFF1004 at 743.205 kb on + strand, within GFF1004 at 743.242 kb on - strand, within GFF1004 at 743.370 kb on - strand, within GFF1004 at 743.397 kb on + strand, within GFF1004 at 743.397 kb on + strand, within GFF1004 at 743.398 kb on - strand, within GFF1004 at 743.398 kb on - strand, within GFF1004 at 743.398 kb on - strand, within GFF1004 at 743.398 kb on - strand, within GFF1004 at 743.421 kb on + strand, within GFF1004 at 743.422 kb on - strand, within GFF1004 at 743.456 kb on + strand, within GFF1004 at 743.629 kb on + strand at 743.629 kb on + strand at 743.630 kb on - strand at 743.630 kb on - strand at 743.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 740,992 + GFF1002 0.31 -0.1 740,992 + GFF1002 0.31 +0.3 740,992 + GFF1002 0.31 +0.1 740,992 + GFF1002 0.31 +0.7 740,993 - GFF1002 0.31 +0.7 741,641 + GFF1002 0.77 -0.7 741,642 - GFF1002 0.77 -0.6 741,864 - +0.5 742,212 + GFF1003 0.33 +1.1 742,213 - GFF1003 0.33 -0.2 742,224 + GFF1003 0.34 +1.6 742,414 - GFF1003 0.59 -0.3 742,414 - GFF1003 0.59 -2.0 742,419 + GFF1003 0.60 -0.0 742,704 + +2.1 743,112 + GFF1004 0.41 -0.1 743,113 - GFF1004 0.41 -0.7 743,205 + GFF1004 0.51 +0.7 743,242 - GFF1004 0.56 -1.1 743,370 - GFF1004 0.70 -1.0 743,397 + GFF1004 0.73 +0.4 743,397 + GFF1004 0.73 -0.2 743,398 - GFF1004 0.74 +0.4 743,398 - GFF1004 0.74 -0.3 743,398 - GFF1004 0.74 -1.0 743,398 - GFF1004 0.74 -0.5 743,421 + GFF1004 0.76 -1.0 743,422 - GFF1004 0.76 +0.3 743,456 + GFF1004 0.80 -1.3 743,629 + -0.6 743,629 + -0.1 743,630 - -0.5 743,630 - +0.3 743,687 - -0.4
Or see this region's nucleotide sequence