Experiment: Right Thigh 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS07710 and RR41_RS07715 are separated by 8 nucleotides RR41_RS07715 and RR41_RS07720 overlap by 29 nucleotides RR41_RS07720 and RR41_RS07725 are separated by 1 nucleotides RR41_RS07725 and RR41_RS07730 are separated by 1 nucleotides RR41_RS07730 and RR41_RS07735 are separated by 108 nucleotides RR41_RS07735 and RR41_RS07740 overlap by 26 nucleotides
RR41_RS07710: RR41_RS07710 - glutamate 5-kinase, at 1,594,351 to 1,594,719
_RS07710
RR41_RS07715: RR41_RS07715 - hypothetical protein, at 1,594,728 to 1,595,135
_RS07715
RR41_RS07720: RR41_RS07720 - hypothetical protein, at 1,595,107 to 1,595,475
_RS07720
RR41_RS07725: RR41_RS07725 - hypothetical protein, at 1,595,477 to 1,595,875
_RS07725
RR41_RS07730: RR41_RS07730 - hypothetical protein, at 1,595,877 to 1,596,095
_RS07730
RR41_RS07735: RR41_RS07735 - SH3 domain-containing protein, at 1,596,204 to 1,596,461
_RS07735
RR41_RS07740: RR41_RS07740 - phage tail tape measure protein, at 1,596,436 to 1,598,766
_RS07740
Position (kb) 1595
1596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1594.477 kb on + strand, within RR41_RS07710 at 1594.478 kb on - strand, within RR41_RS07710 at 1594.528 kb on + strand, within RR41_RS07710 at 1594.528 kb on + strand, within RR41_RS07710 at 1594.601 kb on + strand, within RR41_RS07710 at 1594.760 kb on + strand at 1594.785 kb on + strand, within RR41_RS07715 at 1594.881 kb on - strand, within RR41_RS07715 at 1594.902 kb on + strand, within RR41_RS07715 at 1595.082 kb on + strand, within RR41_RS07715 at 1595.083 kb on - strand, within RR41_RS07715 at 1595.216 kb on + strand, within RR41_RS07720 at 1595.254 kb on - strand, within RR41_RS07720 at 1595.359 kb on + strand, within RR41_RS07720 at 1595.432 kb on - strand, within RR41_RS07720 at 1595.510 kb on - strand at 1595.510 kb on - strand at 1595.521 kb on + strand, within RR41_RS07725 at 1595.656 kb on + strand, within RR41_RS07725 at 1595.656 kb on + strand, within RR41_RS07725 at 1595.666 kb on - strand, within RR41_RS07725 at 1595.846 kb on - strand at 1595.876 kb on + strand at 1595.989 kb on + strand, within RR41_RS07730 at 1595.989 kb on + strand, within RR41_RS07730 at 1596.010 kb on + strand, within RR41_RS07730 at 1596.067 kb on + strand, within RR41_RS07730 at 1596.068 kb on - strand, within RR41_RS07730 at 1596.145 kb on - strand at 1596.145 kb on - strand at 1596.145 kb on - strand at 1596.198 kb on + strand at 1596.332 kb on + strand, within RR41_RS07735 at 1596.350 kb on + strand, within RR41_RS07735 at 1596.372 kb on - strand, within RR41_RS07735 at 1596.394 kb on + strand, within RR41_RS07735 at 1596.398 kb on - strand, within RR41_RS07735 at 1596.505 kb on - strand at 1596.605 kb on + strand at 1596.759 kb on + strand, within RR41_RS07740 at 1596.762 kb on + strand, within RR41_RS07740 at 1596.773 kb on - strand, within RR41_RS07740 at 1596.793 kb on + strand, within RR41_RS07740 at 1596.824 kb on + strand, within RR41_RS07740 at 1596.831 kb on + strand, within RR41_RS07740 at 1596.832 kb on - strand, within RR41_RS07740
Per-strain Table
Position Strand Gene LocusTag Fraction Right Thigh 5 remove 1,594,477 + RR41_RS07710 0.34 +0.1 1,594,478 - RR41_RS07710 0.34 -0.5 1,594,528 + RR41_RS07710 0.48 -2.5 1,594,528 + RR41_RS07710 0.48 -0.9 1,594,601 + RR41_RS07710 0.68 -1.7 1,594,760 + -1.9 1,594,785 + RR41_RS07715 0.14 -1.9 1,594,881 - RR41_RS07715 0.38 +2.3 1,594,902 + RR41_RS07715 0.43 +0.7 1,595,082 + RR41_RS07715 0.87 +1.4 1,595,083 - RR41_RS07715 0.87 -0.9 1,595,216 + RR41_RS07720 0.30 -0.9 1,595,254 - RR41_RS07720 0.40 -0.9 1,595,359 + RR41_RS07720 0.68 +3.0 1,595,432 - RR41_RS07720 0.88 +0.8 1,595,510 - +3.3 1,595,510 - -1.2 1,595,521 + RR41_RS07725 0.11 -0.2 1,595,656 + RR41_RS07725 0.45 +0.1 1,595,656 + RR41_RS07725 0.45 -0.7 1,595,666 - RR41_RS07725 0.47 -1.0 1,595,846 - -2.5 1,595,876 + -0.9 1,595,989 + RR41_RS07730 0.51 +0.1 1,595,989 + RR41_RS07730 0.51 +1.1 1,596,010 + RR41_RS07730 0.61 -0.9 1,596,067 + RR41_RS07730 0.87 +1.7 1,596,068 - RR41_RS07730 0.87 +1.1 1,596,145 - -2.2 1,596,145 - -0.1 1,596,145 - -0.9 1,596,198 + +2.0 1,596,332 + RR41_RS07735 0.50 -0.1 1,596,350 + RR41_RS07735 0.57 -3.1 1,596,372 - RR41_RS07735 0.65 -1.5 1,596,394 + RR41_RS07735 0.74 -0.9 1,596,398 - RR41_RS07735 0.75 +1.4 1,596,505 - -1.5 1,596,605 + -0.9 1,596,759 + RR41_RS07740 0.14 -0.7 1,596,762 + RR41_RS07740 0.14 +1.7 1,596,773 - RR41_RS07740 0.14 +0.1 1,596,793 + RR41_RS07740 0.15 -1.2 1,596,824 + RR41_RS07740 0.17 -0.9 1,596,831 + RR41_RS07740 0.17 +0.7 1,596,832 - RR41_RS07740 0.17 +0.1
Or see this region's nucleotide sequence