Experiment: LB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14835 and HMPREF1181_RS14840 are separated by 79 nucleotides HMPREF1181_RS14840 and HMPREF1181_RS14845 overlap by 4 nucleotides HMPREF1181_RS14845 and HMPREF1181_RS14850 are separated by 11 nucleotides
HMPREF1181_RS14835: HMPREF1181_RS14835 - phosphatidylinositol-4-phosphate 5-kinase, at 150,841 to 151,998
_RS14835
HMPREF1181_RS14840: HMPREF1181_RS14840 - insulinase family protein, at 152,078 to 153,388
_RS14840
HMPREF1181_RS14845: HMPREF1181_RS14845 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 153,385 to 154,143
_RS14845
HMPREF1181_RS14850: HMPREF1181_RS14850 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 154,155 to 154,580
_RS14850
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.089 kb on - strand, within HMPREF1181_RS14835 at 151.089 kb on - strand, within HMPREF1181_RS14835 at 151.160 kb on - strand, within HMPREF1181_RS14835 at 151.179 kb on + strand, within HMPREF1181_RS14835 at 151.179 kb on + strand, within HMPREF1181_RS14835 at 151.180 kb on - strand, within HMPREF1181_RS14835 at 151.222 kb on + strand, within HMPREF1181_RS14835 at 151.251 kb on - strand, within HMPREF1181_RS14835 at 151.251 kb on - strand, within HMPREF1181_RS14835 at 151.251 kb on - strand, within HMPREF1181_RS14835 at 151.283 kb on + strand, within HMPREF1181_RS14835 at 151.283 kb on + strand, within HMPREF1181_RS14835 at 151.284 kb on - strand, within HMPREF1181_RS14835 at 151.320 kb on - strand, within HMPREF1181_RS14835 at 151.364 kb on + strand, within HMPREF1181_RS14835 at 151.365 kb on - strand, within HMPREF1181_RS14835 at 151.399 kb on - strand, within HMPREF1181_RS14835 at 151.434 kb on - strand, within HMPREF1181_RS14835 at 151.479 kb on + strand, within HMPREF1181_RS14835 at 151.526 kb on + strand, within HMPREF1181_RS14835 at 151.527 kb on - strand, within HMPREF1181_RS14835 at 151.572 kb on - strand, within HMPREF1181_RS14835 at 151.587 kb on - strand, within HMPREF1181_RS14835 at 151.592 kb on + strand, within HMPREF1181_RS14835 at 151.596 kb on + strand, within HMPREF1181_RS14835 at 151.596 kb on + strand, within HMPREF1181_RS14835 at 151.647 kb on + strand, within HMPREF1181_RS14835 at 151.648 kb on - strand, within HMPREF1181_RS14835 at 151.657 kb on - strand, within HMPREF1181_RS14835 at 151.661 kb on + strand, within HMPREF1181_RS14835 at 151.668 kb on + strand, within HMPREF1181_RS14835 at 151.733 kb on + strand, within HMPREF1181_RS14835 at 151.778 kb on + strand, within HMPREF1181_RS14835 at 151.849 kb on + strand, within HMPREF1181_RS14835 at 151.964 kb on + strand at 151.964 kb on + strand at 151.983 kb on + strand at 151.987 kb on + strand at 151.987 kb on + strand at 152.013 kb on + strand at 152.022 kb on - strand at 152.045 kb on - strand at 152.151 kb on - strand at 152.167 kb on + strand at 152.168 kb on - strand at 152.290 kb on + strand, within HMPREF1181_RS14840 at 152.348 kb on + strand, within HMPREF1181_RS14840 at 152.349 kb on - strand, within HMPREF1181_RS14840 at 152.456 kb on - strand, within HMPREF1181_RS14840 at 152.464 kb on + strand, within HMPREF1181_RS14840 at 152.464 kb on + strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.713 kb on + strand, within HMPREF1181_RS14840 at 152.713 kb on + strand, within HMPREF1181_RS14840 at 152.714 kb on - strand, within HMPREF1181_RS14840 at 152.833 kb on - strand, within HMPREF1181_RS14840 at 152.877 kb on + strand, within HMPREF1181_RS14840 at 152.879 kb on + strand, within HMPREF1181_RS14840 at 152.879 kb on + strand, within HMPREF1181_RS14840 at 152.951 kb on - strand, within HMPREF1181_RS14840 at 152.951 kb on - strand, within HMPREF1181_RS14840 at 152.957 kb on + strand, within HMPREF1181_RS14840 at 152.962 kb on + strand, within HMPREF1181_RS14840 at 152.963 kb on - strand, within HMPREF1181_RS14840 at 153.063 kb on + strand, within HMPREF1181_RS14840 at 153.063 kb on + strand, within HMPREF1181_RS14840 at 153.070 kb on - strand, within HMPREF1181_RS14840 at 153.106 kb on - strand, within HMPREF1181_RS14840 at 153.108 kb on + strand, within HMPREF1181_RS14840 at 153.167 kb on - strand, within HMPREF1181_RS14840 at 153.234 kb on - strand, within HMPREF1181_RS14840 at 153.293 kb on - strand at 153.343 kb on + strand at 154.144 kb on - strand at 154.170 kb on - strand at 154.175 kb on - strand at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.272 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.303 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.363 kb on - strand, within HMPREF1181_RS14850
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1 x (C) complex media remove 151,089 - HMPREF1181_RS14835 0.21 +0.9 151,089 - HMPREF1181_RS14835 0.21 +0.7 151,160 - HMPREF1181_RS14835 0.28 +0.3 151,179 + HMPREF1181_RS14835 0.29 +0.0 151,179 + HMPREF1181_RS14835 0.29 -1.1 151,180 - HMPREF1181_RS14835 0.29 +0.3 151,222 + HMPREF1181_RS14835 0.33 -1.8 151,251 - HMPREF1181_RS14835 0.35 -0.8 151,251 - HMPREF1181_RS14835 0.35 +0.1 151,251 - HMPREF1181_RS14835 0.35 +0.7 151,283 + HMPREF1181_RS14835 0.38 -0.9 151,283 + HMPREF1181_RS14835 0.38 -0.1 151,284 - HMPREF1181_RS14835 0.38 -0.3 151,320 - HMPREF1181_RS14835 0.41 -1.1 151,364 + HMPREF1181_RS14835 0.45 -1.1 151,365 - HMPREF1181_RS14835 0.45 -1.2 151,399 - HMPREF1181_RS14835 0.48 -0.6 151,434 - HMPREF1181_RS14835 0.51 -0.8 151,479 + HMPREF1181_RS14835 0.55 -0.8 151,526 + HMPREF1181_RS14835 0.59 -0.1 151,527 - HMPREF1181_RS14835 0.59 -0.2 151,572 - HMPREF1181_RS14835 0.63 -1.4 151,587 - HMPREF1181_RS14835 0.64 +0.3 151,592 + HMPREF1181_RS14835 0.65 -0.9 151,596 + HMPREF1181_RS14835 0.65 -0.2 151,596 + HMPREF1181_RS14835 0.65 -1.1 151,647 + HMPREF1181_RS14835 0.70 -0.3 151,648 - HMPREF1181_RS14835 0.70 -1.1 151,657 - HMPREF1181_RS14835 0.70 -0.1 151,661 + HMPREF1181_RS14835 0.71 -0.1 151,668 + HMPREF1181_RS14835 0.71 +0.7 151,733 + HMPREF1181_RS14835 0.77 -0.9 151,778 + HMPREF1181_RS14835 0.81 -0.8 151,849 + HMPREF1181_RS14835 0.87 -0.0 151,964 + -0.6 151,964 + -0.5 151,983 + -1.8 151,987 + -0.3 151,987 + -1.1 152,013 + -0.5 152,022 - -0.1 152,045 - +0.3 152,151 - -0.3 152,167 + +1.9 152,168 - -0.3 152,290 + HMPREF1181_RS14840 0.16 +0.1 152,348 + HMPREF1181_RS14840 0.21 +0.6 152,349 - HMPREF1181_RS14840 0.21 -0.8 152,456 - HMPREF1181_RS14840 0.29 +0.1 152,464 + HMPREF1181_RS14840 0.29 +0.4 152,464 + HMPREF1181_RS14840 0.29 +0.0 152,465 - HMPREF1181_RS14840 0.30 +0.1 152,465 - HMPREF1181_RS14840 0.30 -0.5 152,465 - HMPREF1181_RS14840 0.30 +0.5 152,465 - HMPREF1181_RS14840 0.30 +0.8 152,465 - HMPREF1181_RS14840 0.30 -0.4 152,713 + HMPREF1181_RS14840 0.48 -2.0 152,713 + HMPREF1181_RS14840 0.48 -0.3 152,714 - HMPREF1181_RS14840 0.49 +0.1 152,833 - HMPREF1181_RS14840 0.58 -0.5 152,877 + HMPREF1181_RS14840 0.61 +0.1 152,879 + HMPREF1181_RS14840 0.61 -0.5 152,879 + HMPREF1181_RS14840 0.61 +0.3 152,951 - HMPREF1181_RS14840 0.67 -0.8 152,951 - HMPREF1181_RS14840 0.67 -0.8 152,957 + HMPREF1181_RS14840 0.67 -1.5 152,962 + HMPREF1181_RS14840 0.67 +0.1 152,963 - HMPREF1181_RS14840 0.68 +0.2 153,063 + HMPREF1181_RS14840 0.75 -0.0 153,063 + HMPREF1181_RS14840 0.75 +0.7 153,070 - HMPREF1181_RS14840 0.76 +1.4 153,106 - HMPREF1181_RS14840 0.78 +0.6 153,108 + HMPREF1181_RS14840 0.79 +0.6 153,167 - HMPREF1181_RS14840 0.83 +0.3 153,234 - HMPREF1181_RS14840 0.88 -0.1 153,293 - -0.9 153,343 + +0.6 154,144 - -0.1 154,170 - -0.0 154,175 - +0.1 154,245 - HMPREF1181_RS14850 0.21 -1.5 154,245 - HMPREF1181_RS14850 0.21 -0.7 154,272 - HMPREF1181_RS14850 0.27 -1.6 154,274 - HMPREF1181_RS14850 0.28 -1.4 154,274 - HMPREF1181_RS14850 0.28 -0.3 154,303 - HMPREF1181_RS14850 0.35 -0.5 154,315 - HMPREF1181_RS14850 0.38 -0.7 154,315 - HMPREF1181_RS14850 0.38 -2.4 154,363 - HMPREF1181_RS14850 0.49 -1.6
Or see this region's nucleotide sequence