Experiment: LB 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS08085 and HMPREF1181_RS08090 are separated by 11 nucleotides HMPREF1181_RS08090 and HMPREF1181_RS08095 are separated by 57 nucleotides
HMPREF1181_RS08085: HMPREF1181_RS08085 - efflux RND transporter periplasmic adaptor subunit, at 129,370 to 130,596
_RS08085
HMPREF1181_RS08090: HMPREF1181_RS08090 - CusA/CzcA family heavy metal efflux RND transporter, at 130,608 to 133,754
_RS08090
HMPREF1181_RS08095: HMPREF1181_RS08095 - TolC family protein, at 133,812 to 135,041
_RS08095
Position (kb) 130
131
132
133
134 Strain fitness (log2 ratio) -2
-1
0
1 at 129.718 kb on - strand, within HMPREF1181_RS08085 at 129.756 kb on - strand, within HMPREF1181_RS08085 at 129.781 kb on - strand, within HMPREF1181_RS08085 at 130.061 kb on - strand, within HMPREF1181_RS08085 at 130.139 kb on - strand, within HMPREF1181_RS08085 at 130.147 kb on + strand, within HMPREF1181_RS08085 at 130.199 kb on + strand, within HMPREF1181_RS08085 at 130.199 kb on + strand, within HMPREF1181_RS08085 at 130.200 kb on - strand, within HMPREF1181_RS08085 at 130.200 kb on - strand, within HMPREF1181_RS08085 at 130.202 kb on - strand, within HMPREF1181_RS08085 at 130.264 kb on + strand, within HMPREF1181_RS08085 at 130.268 kb on - strand, within HMPREF1181_RS08085 at 130.268 kb on - strand, within HMPREF1181_RS08085 at 130.331 kb on + strand, within HMPREF1181_RS08085 at 130.332 kb on - strand, within HMPREF1181_RS08085 at 130.362 kb on + strand, within HMPREF1181_RS08085 at 130.413 kb on - strand, within HMPREF1181_RS08085 at 130.414 kb on + strand, within HMPREF1181_RS08085 at 130.484 kb on + strand at 130.622 kb on - strand at 130.622 kb on - strand at 130.688 kb on + strand at 130.692 kb on + strand at 130.693 kb on - strand at 130.693 kb on - strand at 130.803 kb on - strand at 130.836 kb on - strand at 130.885 kb on + strand at 130.885 kb on + strand at 130.992 kb on - strand, within HMPREF1181_RS08090 at 131.035 kb on + strand, within HMPREF1181_RS08090 at 131.036 kb on - strand, within HMPREF1181_RS08090 at 131.200 kb on - strand, within HMPREF1181_RS08090 at 131.271 kb on + strand, within HMPREF1181_RS08090 at 131.289 kb on + strand, within HMPREF1181_RS08090 at 131.434 kb on + strand, within HMPREF1181_RS08090 at 131.434 kb on + strand, within HMPREF1181_RS08090 at 131.435 kb on - strand, within HMPREF1181_RS08090 at 131.439 kb on - strand, within HMPREF1181_RS08090 at 131.572 kb on + strand, within HMPREF1181_RS08090 at 131.573 kb on - strand, within HMPREF1181_RS08090 at 131.573 kb on - strand, within HMPREF1181_RS08090 at 131.612 kb on + strand, within HMPREF1181_RS08090 at 131.681 kb on + strand, within HMPREF1181_RS08090 at 131.682 kb on - strand, within HMPREF1181_RS08090 at 131.791 kb on - strand, within HMPREF1181_RS08090 at 131.887 kb on - strand, within HMPREF1181_RS08090 at 131.976 kb on - strand, within HMPREF1181_RS08090 at 132.061 kb on + strand, within HMPREF1181_RS08090 at 132.130 kb on + strand, within HMPREF1181_RS08090 at 132.164 kb on - strand, within HMPREF1181_RS08090 at 132.164 kb on - strand, within HMPREF1181_RS08090 at 132.265 kb on + strand, within HMPREF1181_RS08090 at 132.265 kb on + strand, within HMPREF1181_RS08090 at 132.434 kb on - strand, within HMPREF1181_RS08090 at 132.454 kb on + strand, within HMPREF1181_RS08090 at 132.581 kb on - strand, within HMPREF1181_RS08090 at 132.680 kb on - strand, within HMPREF1181_RS08090 at 132.687 kb on - strand, within HMPREF1181_RS08090 at 132.736 kb on + strand, within HMPREF1181_RS08090 at 132.913 kb on + strand, within HMPREF1181_RS08090 at 132.915 kb on + strand, within HMPREF1181_RS08090 at 132.916 kb on - strand, within HMPREF1181_RS08090 at 132.952 kb on + strand, within HMPREF1181_RS08090 at 133.036 kb on - strand, within HMPREF1181_RS08090 at 133.040 kb on - strand, within HMPREF1181_RS08090 at 133.049 kb on - strand, within HMPREF1181_RS08090 at 133.067 kb on + strand, within HMPREF1181_RS08090 at 133.068 kb on - strand, within HMPREF1181_RS08090 at 133.073 kb on + strand, within HMPREF1181_RS08090 at 133.156 kb on + strand, within HMPREF1181_RS08090 at 133.275 kb on - strand, within HMPREF1181_RS08090 at 133.286 kb on - strand, within HMPREF1181_RS08090 at 133.286 kb on - strand, within HMPREF1181_RS08090 at 133.286 kb on - strand, within HMPREF1181_RS08090 at 133.406 kb on + strand, within HMPREF1181_RS08090 at 133.407 kb on - strand, within HMPREF1181_RS08090 at 133.480 kb on - strand at 133.779 kb on + strand at 133.794 kb on - strand at 133.827 kb on - strand at 133.944 kb on - strand, within HMPREF1181_RS08095 at 134.092 kb on + strand, within HMPREF1181_RS08095 at 134.164 kb on + strand, within HMPREF1181_RS08095 at 134.268 kb on + strand, within HMPREF1181_RS08095 at 134.269 kb on - strand, within HMPREF1181_RS08095 at 134.269 kb on - strand, within HMPREF1181_RS08095 at 134.269 kb on - strand, within HMPREF1181_RS08095 at 134.381 kb on + strand, within HMPREF1181_RS08095 at 134.459 kb on - strand, within HMPREF1181_RS08095
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1 x (C) complex media remove 129,718 - HMPREF1181_RS08085 0.28 -0.6 129,756 - HMPREF1181_RS08085 0.31 -1.2 129,781 - HMPREF1181_RS08085 0.33 -0.6 130,061 - HMPREF1181_RS08085 0.56 -0.4 130,139 - HMPREF1181_RS08085 0.63 -0.4 130,147 + HMPREF1181_RS08085 0.63 -0.7 130,199 + HMPREF1181_RS08085 0.68 -1.3 130,199 + HMPREF1181_RS08085 0.68 -0.1 130,200 - HMPREF1181_RS08085 0.68 -0.2 130,200 - HMPREF1181_RS08085 0.68 -0.2 130,202 - HMPREF1181_RS08085 0.68 +0.2 130,264 + HMPREF1181_RS08085 0.73 -0.8 130,268 - HMPREF1181_RS08085 0.73 +1.1 130,268 - HMPREF1181_RS08085 0.73 -0.3 130,331 + HMPREF1181_RS08085 0.78 -1.1 130,332 - HMPREF1181_RS08085 0.78 +0.2 130,362 + HMPREF1181_RS08085 0.81 -0.9 130,413 - HMPREF1181_RS08085 0.85 +0.0 130,414 + HMPREF1181_RS08085 0.85 -0.0 130,484 + -0.6 130,622 - -0.3 130,622 - +0.4 130,688 + -1.0 130,692 + -0.7 130,693 - -0.6 130,693 - -0.1 130,803 - -0.3 130,836 - -0.1 130,885 + -1.3 130,885 + -0.6 130,992 - HMPREF1181_RS08090 0.12 -0.6 131,035 + HMPREF1181_RS08090 0.14 -1.1 131,036 - HMPREF1181_RS08090 0.14 -0.9 131,200 - HMPREF1181_RS08090 0.19 -0.5 131,271 + HMPREF1181_RS08090 0.21 -0.8 131,289 + HMPREF1181_RS08090 0.22 -0.9 131,434 + HMPREF1181_RS08090 0.26 -1.0 131,434 + HMPREF1181_RS08090 0.26 -0.5 131,435 - HMPREF1181_RS08090 0.26 -1.1 131,439 - HMPREF1181_RS08090 0.26 -2.2 131,572 + HMPREF1181_RS08090 0.31 +0.1 131,573 - HMPREF1181_RS08090 0.31 +0.5 131,573 - HMPREF1181_RS08090 0.31 -0.8 131,612 + HMPREF1181_RS08090 0.32 -0.2 131,681 + HMPREF1181_RS08090 0.34 -1.4 131,682 - HMPREF1181_RS08090 0.34 -0.8 131,791 - HMPREF1181_RS08090 0.38 -0.6 131,887 - HMPREF1181_RS08090 0.41 +0.2 131,976 - HMPREF1181_RS08090 0.43 -1.9 132,061 + HMPREF1181_RS08090 0.46 -1.0 132,130 + HMPREF1181_RS08090 0.48 -0.1 132,164 - HMPREF1181_RS08090 0.49 +0.3 132,164 - HMPREF1181_RS08090 0.49 -0.2 132,265 + HMPREF1181_RS08090 0.53 -0.4 132,265 + HMPREF1181_RS08090 0.53 -1.7 132,434 - HMPREF1181_RS08090 0.58 -0.4 132,454 + HMPREF1181_RS08090 0.59 -0.4 132,581 - HMPREF1181_RS08090 0.63 +0.9 132,680 - HMPREF1181_RS08090 0.66 +0.1 132,687 - HMPREF1181_RS08090 0.66 -0.5 132,736 + HMPREF1181_RS08090 0.68 -1.1 132,913 + HMPREF1181_RS08090 0.73 -1.4 132,915 + HMPREF1181_RS08090 0.73 -2.1 132,916 - HMPREF1181_RS08090 0.73 -1.5 132,952 + HMPREF1181_RS08090 0.74 +0.1 133,036 - HMPREF1181_RS08090 0.77 -0.9 133,040 - HMPREF1181_RS08090 0.77 -0.7 133,049 - HMPREF1181_RS08090 0.78 -0.5 133,067 + HMPREF1181_RS08090 0.78 +0.1 133,068 - HMPREF1181_RS08090 0.78 -0.6 133,073 + HMPREF1181_RS08090 0.78 -0.3 133,156 + HMPREF1181_RS08090 0.81 -1.4 133,275 - HMPREF1181_RS08090 0.85 -0.4 133,286 - HMPREF1181_RS08090 0.85 -0.5 133,286 - HMPREF1181_RS08090 0.85 -0.7 133,286 - HMPREF1181_RS08090 0.85 -2.1 133,406 + HMPREF1181_RS08090 0.89 -0.8 133,407 - HMPREF1181_RS08090 0.89 -0.5 133,480 - -0.4 133,779 + +1.6 133,794 - -1.3 133,827 - -1.5 133,944 - HMPREF1181_RS08095 0.11 -0.3 134,092 + HMPREF1181_RS08095 0.23 -0.4 134,164 + HMPREF1181_RS08095 0.29 -0.4 134,268 + HMPREF1181_RS08095 0.37 -0.2 134,269 - HMPREF1181_RS08095 0.37 -1.0 134,269 - HMPREF1181_RS08095 0.37 -0.1 134,269 - HMPREF1181_RS08095 0.37 -0.7 134,381 + HMPREF1181_RS08095 0.46 -0.4 134,459 - HMPREF1181_RS08095 0.53 +0.5
Or see this region's nucleotide sequence