Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF799 and GFF800 are separated by 135 nucleotides GFF800 and GFF801 overlap by 4 nucleotides GFF801 and GFF802 are separated by 91 nucleotides GFF802 and GFF803 are separated by 73 nucleotides
GFF799 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 494,555 to 495,406
GFF799
GFF800 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 495,542 to 496,279
GFF800
GFF801 - Permease of the drug/metabolite transporter (DMT) superfamily, at 496,276 to 497,244
GFF801
GFF802 - NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor), at 497,336 to 497,914
GFF802
GFF803 - PQQ-dependent oxidoreductase, gdhB family, at 497,988 to 499,121
GFF803
Position (kb) 496
497
498 Strain fitness (log2 ratio) -2
-1
0
1
2 at 495.418 kb on + strand at 495.419 kb on - strand at 495.419 kb on - strand at 495.528 kb on + strand at 496.061 kb on + strand, within GFF800 at 496.061 kb on + strand, within GFF800 at 496.061 kb on + strand, within GFF800 at 496.061 kb on + strand, within GFF800 at 496.062 kb on - strand, within GFF800 at 496.062 kb on - strand, within GFF800 at 496.062 kb on - strand, within GFF800 at 496.133 kb on + strand, within GFF800 at 496.133 kb on + strand, within GFF800 at 496.169 kb on + strand, within GFF800 at 496.169 kb on + strand, within GFF800 at 496.170 kb on - strand, within GFF800 at 496.170 kb on - strand, within GFF800 at 496.170 kb on - strand, within GFF800 at 496.390 kb on + strand, within GFF801 at 496.391 kb on - strand, within GFF801 at 496.576 kb on + strand, within GFF801 at 496.576 kb on + strand, within GFF801 at 496.576 kb on + strand, within GFF801 at 496.577 kb on - strand, within GFF801 at 496.577 kb on - strand, within GFF801 at 496.588 kb on + strand, within GFF801 at 496.589 kb on - strand, within GFF801 at 496.678 kb on + strand, within GFF801 at 496.849 kb on + strand, within GFF801 at 496.850 kb on - strand, within GFF801 at 496.897 kb on + strand, within GFF801 at 496.996 kb on + strand, within GFF801 at 496.997 kb on - strand, within GFF801 at 496.997 kb on - strand, within GFF801 at 497.050 kb on + strand, within GFF801 at 497.050 kb on + strand, within GFF801 at 497.050 kb on + strand, within GFF801 at 497.263 kb on + strand at 497.263 kb on + strand at 497.447 kb on + strand, within GFF802 at 497.447 kb on + strand, within GFF802 at 497.448 kb on - strand, within GFF802 at 497.448 kb on - strand, within GFF802 at 497.601 kb on - strand, within GFF802 at 497.601 kb on - strand, within GFF802 at 497.852 kb on + strand, within GFF802
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 495,418 + +0.4 495,419 - +0.1 495,419 - -0.5 495,528 + -0.5 496,061 + GFF800 0.70 -0.8 496,061 + GFF800 0.70 -0.8 496,061 + GFF800 0.70 -0.1 496,061 + GFF800 0.70 -2.5 496,062 - GFF800 0.70 -0.8 496,062 - GFF800 0.70 -0.7 496,062 - GFF800 0.70 -0.2 496,133 + GFF800 0.80 -1.1 496,133 + GFF800 0.80 -0.5 496,169 + GFF800 0.85 -0.3 496,169 + GFF800 0.85 -0.7 496,170 - GFF800 0.85 -0.8 496,170 - GFF800 0.85 -1.2 496,170 - GFF800 0.85 +0.3 496,390 + GFF801 0.12 +0.5 496,391 - GFF801 0.12 -1.2 496,576 + GFF801 0.31 +1.2 496,576 + GFF801 0.31 +0.1 496,576 + GFF801 0.31 -0.3 496,577 - GFF801 0.31 +0.6 496,577 - GFF801 0.31 +1.7 496,588 + GFF801 0.32 +0.4 496,589 - GFF801 0.32 -0.5 496,678 + GFF801 0.41 +0.7 496,849 + GFF801 0.59 +0.9 496,850 - GFF801 0.59 +1.1 496,897 + GFF801 0.64 +2.1 496,996 + GFF801 0.74 +0.3 496,997 - GFF801 0.74 +1.4 496,997 - GFF801 0.74 +0.8 497,050 + GFF801 0.80 +0.3 497,050 + GFF801 0.80 +0.8 497,050 + GFF801 0.80 +0.9 497,263 + +0.7 497,263 + +0.3 497,447 + GFF802 0.19 +0.5 497,447 + GFF802 0.19 +1.5 497,448 - GFF802 0.19 +0.5 497,448 - GFF802 0.19 +0.4 497,601 - GFF802 0.46 +1.1 497,601 - GFF802 0.46 -0.5 497,852 + GFF802 0.89 +0.7
Or see this region's nucleotide sequence