Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF752

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF751 and GFF752 are separated by 426 nucleotidesGFF752 and GFF753 are separated by 19 nucleotides GFF751 - Rhs family protein, at 438,539 to 441,220 GFF751 GFF752 - Permease of the drug/metabolite transporter (DMT) superfamily, at 441,647 to 442,585 GFF752 GFF753 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 442,605 to 443,402 GFF753 Position (kb) 441 442 443Strain fitness (log2 ratio) -2 -1 0 1 2at 440.647 kb on - strand, within GFF751at 440.647 kb on - strand, within GFF751at 440.668 kb on - strand, within GFF751at 440.668 kb on - strand, within GFF751at 440.668 kb on - strand, within GFF751at 440.683 kb on + strand, within GFF751at 440.684 kb on - strand, within GFF751at 440.684 kb on - strand, within GFF751at 440.784 kb on + strand, within GFF751at 440.784 kb on + strand, within GFF751at 440.785 kb on - strand, within GFF751at 440.832 kb on + strand, within GFF751at 440.832 kb on + strand, within GFF751at 440.832 kb on + strand, within GFF751at 440.991 kb on + strandat 440.991 kb on + strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 440.992 kb on - strandat 441.002 kb on + strandat 441.012 kb on + strandat 441.012 kb on + strandat 441.013 kb on - strandat 441.013 kb on - strandat 441.013 kb on - strandat 441.013 kb on - strandat 441.013 kb on - strandat 441.013 kb on - strandat 441.087 kb on + strandat 441.087 kb on + strandat 441.087 kb on + strandat 441.087 kb on + strandat 441.087 kb on + strandat 441.087 kb on + strandat 441.088 kb on - strandat 441.088 kb on - strandat 441.088 kb on - strandat 441.123 kb on + strandat 441.123 kb on + strandat 441.123 kb on + strandat 441.123 kb on + strandat 441.153 kb on + strandat 441.153 kb on + strandat 441.154 kb on - strandat 441.154 kb on - strandat 441.207 kb on + strandat 441.208 kb on - strandat 441.208 kb on - strandat 441.208 kb on - strandat 441.222 kb on + strandat 441.222 kb on + strandat 441.222 kb on + strandat 441.223 kb on - strandat 441.390 kb on - strandat 441.424 kb on + strandat 441.425 kb on - strandat 441.425 kb on - strandat 441.929 kb on + strand, within GFF752at 441.932 kb on + strand, within GFF752at 441.932 kb on + strand, within GFF752at 441.932 kb on + strand, within GFF752at 441.932 kb on + strand, within GFF752at 441.932 kb on + strand, within GFF752at 441.933 kb on - strand, within GFF752at 441.933 kb on - strand, within GFF752at 441.968 kb on + strand, within GFF752at 441.968 kb on + strand, within GFF752at 441.968 kb on + strand, within GFF752at 441.968 kb on + strand, within GFF752at 441.969 kb on - strand, within GFF752at 442.001 kb on + strand, within GFF752at 442.001 kb on + strand, within GFF752at 442.001 kb on + strand, within GFF752at 442.043 kb on + strand, within GFF752at 442.043 kb on + strand, within GFF752at 442.043 kb on + strand, within GFF752at 442.043 kb on + strand, within GFF752at 442.043 kb on + strand, within GFF752at 442.044 kb on - strand, within GFF752at 442.091 kb on + strand, within GFF752at 442.092 kb on - strand, within GFF752at 442.196 kb on + strand, within GFF752at 442.196 kb on + strand, within GFF752at 442.196 kb on + strand, within GFF752at 442.197 kb on - strand, within GFF752at 442.205 kb on + strand, within GFF752at 442.206 kb on - strand, within GFF752at 442.584 kb on - strandat 443.346 kb on + strandat 443.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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440,647 - GFF751 0.79 +0.6
440,647 - GFF751 0.79 +0.1
440,668 - GFF751 0.79 -0.1
440,668 - GFF751 0.79 -0.3
440,668 - GFF751 0.79 -0.1
440,683 + GFF751 0.80 +0.3
440,684 - GFF751 0.80 -0.3
440,684 - GFF751 0.80 -0.1
440,784 + GFF751 0.84 -0.1
440,784 + GFF751 0.84 -1.1
440,785 - GFF751 0.84 -0.4
440,832 + GFF751 0.85 -0.3
440,832 + GFF751 0.85 -1.1
440,832 + GFF751 0.85 +0.4
440,991 + +0.4
440,991 + -0.2
440,992 - -0.0
440,992 - +1.0
440,992 - -0.7
440,992 - -0.4
440,992 - +1.6
440,992 - +0.1
440,992 - -0.6
440,992 - +0.3
440,992 - +1.6
440,992 - -0.5
440,992 - -0.7
441,002 + -0.1
441,012 + -0.1
441,012 + -0.7
441,013 - +0.4
441,013 - +0.6
441,013 - +0.0
441,013 - +0.6
441,013 - -0.2
441,013 - +0.8
441,087 + -1.0
441,087 + -0.1
441,087 + +0.7
441,087 + -0.4
441,087 + -0.3
441,087 + +1.3
441,088 - +0.1
441,088 - +0.7
441,088 - +0.0
441,123 + -0.1
441,123 + -0.2
441,123 + +0.2
441,123 + -0.3
441,153 + -0.1
441,153 + +0.1
441,154 - -0.5
441,154 - -0.1
441,207 + +0.5
441,208 - +0.3
441,208 - -1.0
441,208 - -2.3
441,222 + -0.3
441,222 + -0.6
441,222 + +0.6
441,223 - -0.1
441,390 - -0.1
441,424 + -1.4
441,425 - -0.1
441,425 - +0.6
441,929 + GFF752 0.30 -1.0
441,932 + GFF752 0.30 +0.2
441,932 + GFF752 0.30 -0.7
441,932 + GFF752 0.30 +0.4
441,932 + GFF752 0.30 +0.4
441,932 + GFF752 0.30 +0.4
441,933 - GFF752 0.30 -0.1
441,933 - GFF752 0.30 -0.0
441,968 + GFF752 0.34 -0.0
441,968 + GFF752 0.34 +0.3
441,968 + GFF752 0.34 +0.7
441,968 + GFF752 0.34 -0.1
441,969 - GFF752 0.34 +0.6
442,001 + GFF752 0.38 +1.0
442,001 + GFF752 0.38 +0.3
442,001 + GFF752 0.38 +1.0
442,043 + GFF752 0.42 +0.5
442,043 + GFF752 0.42 +0.2
442,043 + GFF752 0.42 -0.0
442,043 + GFF752 0.42 -0.5
442,043 + GFF752 0.42 -0.7
442,044 - GFF752 0.42 -0.1
442,091 + GFF752 0.47 +0.1
442,092 - GFF752 0.47 +1.9
442,196 + GFF752 0.58 +0.2
442,196 + GFF752 0.58 -1.1
442,196 + GFF752 0.58 +0.1
442,197 - GFF752 0.59 +0.4
442,205 + GFF752 0.59 -2.7
442,206 - GFF752 0.60 +0.1
442,584 - -0.1
443,346 + -0.2
443,347 - +1.4

Or see this region's nucleotide sequence