Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF708

Experiment: Ying_all64 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF707 and GFF708 are separated by 83 nucleotidesGFF708 and GFF1076 are separated by 56 nucleotidesGFF1076 and GFF709 are separated by 39 nucleotides GFF707 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 386,567 to 387,601 GFF707 GFF708 - Nucleoside-diphosphate-sugar epimerases, at 387,685 to 388,602 GFF708 GFF1076 - tRNA-Leu-CAA, at 388,659 to 388,740 GFF1076 GFF709 - Cysteine synthase B (EC 2.5.1.47), at 388,780 to 389,682 GFF709 Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.799 kb on + strand, within GFF707at 386.800 kb on - strand, within GFF707at 386.800 kb on - strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.851 kb on - strand, within GFF707at 386.880 kb on + strand, within GFF707at 387.012 kb on + strand, within GFF707at 387.012 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.154 kb on - strand, within GFF707at 387.154 kb on - strand, within GFF707at 387.192 kb on + strand, within GFF707at 387.192 kb on + strand, within GFF707at 387.208 kb on - strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.385 kb on - strand, within GFF707at 387.385 kb on - strand, within GFF707at 387.498 kb on + strandat 387.498 kb on + strandat 387.499 kb on - strandat 387.499 kb on - strandat 387.601 kb on + strandat 387.601 kb on + strandat 387.602 kb on - strandat 387.602 kb on - strandat 387.602 kb on - strandat 387.617 kb on + strandat 387.662 kb on - strandat 387.662 kb on - strandat 388.039 kb on + strand, within GFF708at 388.039 kb on + strand, within GFF708at 388.061 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.411 kb on + strand, within GFF708at 388.412 kb on - strand, within GFF708at 388.412 kb on - strand, within GFF708at 388.412 kb on - strand, within GFF708at 388.436 kb on - strand, within GFF708at 388.436 kb on - strand, within GFF708at 388.787 kb on - strandat 389.248 kb on + strand, within GFF709at 389.458 kb on + strand, within GFF709at 389.488 kb on + strand, within GFF709at 389.488 kb on + strand, within GFF709at 389.488 kb on + strand, within GFF709at 389.488 kb on + strand, within GFF709

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3
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386,688 + GFF707 0.12 +0.3
386,688 + GFF707 0.12 +0.3
386,688 + GFF707 0.12 +0.4
386,688 + GFF707 0.12 -0.7
386,688 + GFF707 0.12 +0.5
386,689 - GFF707 0.12 -0.2
386,689 - GFF707 0.12 +0.4
386,689 - GFF707 0.12 -1.1
386,689 - GFF707 0.12 +0.3
386,689 - GFF707 0.12 -0.1
386,799 + GFF707 0.22 +0.6
386,800 - GFF707 0.23 -1.3
386,800 - GFF707 0.23 -0.1
386,850 + GFF707 0.27 +0.1
386,850 + GFF707 0.27 +0.1
386,850 + GFF707 0.27 +0.5
386,851 - GFF707 0.27 +0.0
386,880 + GFF707 0.30 +0.9
387,012 + GFF707 0.43 +0.9
387,012 + GFF707 0.43 +0.0
387,153 + GFF707 0.57 -0.7
387,153 + GFF707 0.57 -0.1
387,153 + GFF707 0.57 +0.8
387,153 + GFF707 0.57 +0.3
387,154 - GFF707 0.57 -1.8
387,154 - GFF707 0.57 -0.1
387,192 + GFF707 0.60 +0.2
387,192 + GFF707 0.60 +0.7
387,208 - GFF707 0.62 +0.1
387,384 + GFF707 0.79 +0.9
387,384 + GFF707 0.79 +0.3
387,384 + GFF707 0.79 -0.8
387,384 + GFF707 0.79 -0.9
387,385 - GFF707 0.79 +0.4
387,385 - GFF707 0.79 -0.5
387,498 + +0.3
387,498 + +0.2
387,499 - -0.9
387,499 - -0.1
387,601 + +0.5
387,601 + +0.6
387,602 - -0.5
387,602 - -0.8
387,602 - +0.9
387,617 + +0.4
387,662 - -1.7
387,662 - -0.0
388,039 + GFF708 0.39 -1.8
388,039 + GFF708 0.39 -0.4
388,061 - GFF708 0.41 -0.8
388,214 - GFF708 0.58 -1.3
388,214 - GFF708 0.58 -0.5
388,214 - GFF708 0.58 -0.9
388,214 - GFF708 0.58 -1.1
388,214 - GFF708 0.58 -0.7
388,214 - GFF708 0.58 +0.1
388,214 - GFF708 0.58 -0.9
388,294 + GFF708 0.66 -1.2
388,294 + GFF708 0.66 -2.8
388,294 + GFF708 0.66 -1.1
388,294 + GFF708 0.66 -1.6
388,294 + GFF708 0.66 -1.3
388,294 + GFF708 0.66 -0.9
388,294 - GFF708 0.66 -1.8
388,295 - GFF708 0.66 -0.6
388,295 - GFF708 0.66 -0.5
388,295 - GFF708 0.66 -0.7
388,295 - GFF708 0.66 -0.5
388,295 - GFF708 0.66 -0.1
388,411 + GFF708 0.79 -0.7
388,412 - GFF708 0.79 -1.8
388,412 - GFF708 0.79 -0.3
388,412 - GFF708 0.79 +0.2
388,436 - GFF708 0.82 -0.1
388,436 - GFF708 0.82 -0.1
388,787 - -1.1
389,248 + GFF709 0.52 -0.7
389,458 + GFF709 0.75 -1.9
389,488 + GFF709 0.78 -0.7
389,488 + GFF709 0.78 -2.3
389,488 + GFF709 0.78 -2.8
389,488 + GFF709 0.78 -1.7

Or see this region's nucleotide sequence