Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF682 and GFF683 are separated by 18 nucleotides GFF683 and GFF684 are separated by 145 nucleotides GFF684 and GFF685 are separated by 11 nucleotides GFF685 and GFF686 are separated by 80 nucleotides
GFF682 - Acyl dehydratase, at 365,705 to 366,169
GFF682
GFF683 - hypothetical protein, at 366,188 to 366,523
GFF683
GFF684 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 366,669 to 367,142
GFF684
GFF685 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 367,154 to 367,879
GFF685
GFF686 - Biotin synthesis protein BioC, at 367,960 to 368,838
GFF686
Position (kb) 367
368 Strain fitness (log2 ratio) -1
0
1 at 366.190 kb on - strand at 366.301 kb on - strand, within GFF683 at 366.301 kb on - strand, within GFF683 at 366.610 kb on + strand at 366.610 kb on + strand at 366.610 kb on + strand at 366.610 kb on + strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.983 kb on - strand, within GFF684 at 367.322 kb on + strand, within GFF685 at 367.476 kb on + strand, within GFF685 at 367.476 kb on + strand, within GFF685 at 367.477 kb on - strand, within GFF685 at 367.477 kb on - strand, within GFF685 at 367.650 kb on + strand, within GFF685 at 367.888 kb on + strand at 367.888 kb on + strand at 367.888 kb on + strand at 367.890 kb on + strand at 367.890 kb on + strand at 367.890 kb on + strand at 367.891 kb on - strand at 367.891 kb on - strand at 367.891 kb on - strand at 368.563 kb on + strand, within GFF686
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 366,190 - -0.1 366,301 - GFF683 0.34 +0.1 366,301 - GFF683 0.34 +1.5 366,610 + -0.0 366,610 + +0.1 366,610 + +0.9 366,610 + +0.2 366,611 - -0.0 366,611 - -0.2 366,611 - -0.0 366,611 - +0.0 366,611 - -0.7 366,611 - -0.1 366,611 - +0.1 366,611 - +1.2 366,983 - GFF684 0.66 +0.3 367,322 + GFF685 0.23 -0.5 367,476 + GFF685 0.44 -0.4 367,476 + GFF685 0.44 -0.4 367,477 - GFF685 0.44 -0.6 367,477 - GFF685 0.44 -0.1 367,650 + GFF685 0.68 -0.5 367,888 + +0.6 367,888 + -0.1 367,888 + +0.5 367,890 + -0.1 367,890 + -0.9 367,890 + +0.1 367,891 - +0.2 367,891 - +1.5 367,891 - -1.1 368,563 + GFF686 0.69 -1.1
Or see this region's nucleotide sequence