Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5715

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,740,039	+		GFF5714	0.12	+0.1
2,740,039	+		GFF5714	0.12	+0.2
2,740,039	+		GFF5714	0.12	-0.0
2,740,040	-		GFF5714	0.12	-0.0
2,740,211	-		GFF5714	0.32	+0.0
2,740,289	+		GFF5714	0.41	-0.0
2,740,289	+		GFF5714	0.41	-0.0
2,740,323	-		GFF5714	0.45	+0.0
2,740,327	+		GFF5714	0.46	-1.5
2,740,328	-		GFF5714	0.46	-0.0
2,740,594	+		GFF5714	0.77	-0.6
2,740,595	-		GFF5714	0.78	-0.1
2,740,595	-		GFF5714	0.78	-1.2
2,740,595	-		GFF5714	0.78	-0.1
2,740,595	-		GFF5714	0.78	-0.7
2,740,595	-		GFF5714	0.78	-0.9
2,740,771	+				+0.3
2,740,772	-				-1.1
2,741,067	-		GFF5715	0.32	+0.6
2,741,076	-		GFF5715	0.33	-1.2
2,741,490	-		GFF5715	0.82	-0.5
2,741,490	-		GFF5715	0.82	+1.6
2,741,871	+		GFF5716	0.26	-0.1
2,741,898	+		GFF5716	0.29	-0.6
2,741,898	+		GFF5716	0.29	+0.5
2,741,898	+		GFF5716	0.29	-0.3
2,741,899	-		GFF5716	0.30	+0.1
2,742,450	+				+0.3
2,742,450	+				-0.8
2,742,450	+				+0.6
2,742,450	+				-0.6
2,742,451	-				-0.2
2,742,451	-				+1.0