Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5582

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,594,120	-		GFF5581	0.64	+1.2
2,594,120	-		GFF5581	0.64	+0.0
2,594,372	-		GFF5581	0.74	+0.4
2,594,737	+		GFF5581	0.88	-0.2
2,594,738	-		GFF5581	0.88	+0.5
2,594,738	-		GFF5581	0.88	+0.5
2,594,812	+				-1.4
2,594,812	+				+0.7
2,594,812	+				+1.4
2,594,812	+				+0.1
2,594,813	-				+1.4
2,595,176	+		GFF5582	0.16	-0.0
2,595,176	+		GFF5582	0.16	+0.5
2,595,176	+		GFF5582	0.16	-0.5
2,595,177	-		GFF5582	0.16	-1.1
2,595,177	-		GFF5582	0.16	-0.7
2,595,177	-		GFF5582	0.16	+0.7
2,595,218	+		GFF5582	0.21	+0.4
2,595,218	+		GFF5582	0.21	-1.0
2,595,218	+		GFF5582	0.21	+0.3
2,595,218	+		GFF5582	0.21	+0.0
2,595,218	+		GFF5582	0.21	+0.5
2,595,246	-		GFF5582	0.24	+0.4
2,595,246	-		GFF5582	0.24	-1.5
2,595,771	-		GFF5582	0.88	+0.2
2,595,771	-		GFF5582	0.88	+0.2
2,596,104	+		GFF5583	0.20	-0.6
2,596,105	-		GFF5583	0.20	-0.4
2,596,145	+		GFF5583	0.24	+0.7
2,596,145	+		GFF5583	0.24	+0.1
2,596,145	+		GFF5583	0.24	-0.3
2,596,146	-		GFF5583	0.24	-0.1
2,596,204	-		GFF5583	0.31	-0.0
2,596,236	-		GFF5583	0.34	-0.2
2,596,236	-		GFF5583	0.34	-0.1
2,596,277	+		GFF5583	0.39	-1.2
2,596,278	-		GFF5583	0.39	+2.8
2,596,278	-		GFF5583	0.39	-0.7
2,596,278	-		GFF5583	0.39	-0.4
2,596,442	+		GFF5583	0.57	-0.3
2,596,443	-		GFF5583	0.57	+0.0
2,596,532	+		GFF5583	0.67	+1.1
2,596,532	+		GFF5583	0.67	-0.5
2,596,532	+		GFF5583	0.67	-1.0
2,596,532	+		GFF5583	0.67	+1.3
2,596,532	+		GFF5583	0.67	+1.3
2,596,532	+		GFF5583	0.67	-0.7
2,596,607	+		GFF5583	0.75	+0.4
2,596,718	+		GFF5583	0.88	+0.0