Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5541

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,546,257	+		GFF5540	0.36	+0.8
2,546,341	+		GFF5540	0.42	+0.7
2,546,346	+		GFF5540	0.43	-0.1
2,546,346	+		GFF5540	0.43	+0.0
2,546,346	+		GFF5540	0.43	+0.3
2,546,346	+		GFF5540	0.43	+0.1
2,546,346	+		GFF5540	0.43	+0.3
2,546,346	+		GFF5540	0.43	-0.5
2,546,347	-		GFF5540	0.43	+0.6
2,546,347	-		GFF5540	0.43	-0.9
2,546,468	-		GFF5540	0.51	-0.6
2,546,479	+		GFF5540	0.52	-0.4
2,546,479	+		GFF5540	0.52	-0.4
2,546,479	+		GFF5540	0.52	-0.1
2,546,480	-		GFF5540	0.52	-0.3
2,546,480	-		GFF5540	0.52	+0.4
2,546,480	-		GFF5540	0.52	-0.6
2,546,480	-		GFF5540	0.52	-0.2
2,546,480	-		GFF5540	0.52	+0.5
2,546,480	-		GFF5540	0.52	-0.0
2,546,647	+		GFF5540	0.64	-1.5
2,546,647	+		GFF5540	0.64	-0.1
2,546,647	+		GFF5540	0.64	-0.4
2,546,648	-		GFF5540	0.64	+0.2
2,546,648	-		GFF5540	0.64	+0.5
2,546,648	-		GFF5540	0.64	+1.0
2,546,689	+		GFF5540	0.67	+0.5
2,546,689	+		GFF5540	0.67	+0.2
2,546,689	+		GFF5540	0.67	-0.7
2,546,690	-		GFF5540	0.67	-0.6
2,546,690	-		GFF5540	0.67	+0.0
2,546,690	-		GFF5540	0.67	-0.6
2,546,690	-		GFF5540	0.67	+0.0
2,546,693	-		GFF5540	0.67	+0.0
2,546,752	+		GFF5540	0.71	+0.1
2,546,752	+		GFF5540	0.71	-0.4
2,546,752	+		GFF5540	0.71	-2.0
2,546,752	+		GFF5540	0.71	-0.0
2,546,752	+		GFF5540	0.71	-0.0
2,546,753	-		GFF5540	0.71	+0.0
2,546,753	-		GFF5540	0.71	+0.1
2,546,753	-		GFF5540	0.71	-1.2
2,546,860	+		GFF5540	0.79	-0.1
2,546,861	-		GFF5540	0.79	+0.1
2,547,010	+		GFF5540	0.89	+0.2
2,547,011	-		GFF5540	0.89	-0.5
2,547,109	+				-0.7
2,547,109	+				-0.3
2,547,118	+				+1.1
2,547,119	-				-0.0
2,547,119	-				+0.2
2,547,201	+				+0.4
2,547,201	+				-0.2
2,547,201	+				-1.2
2,547,201	+				-0.5
2,547,201	-				+0.8
2,547,202	-				-0.0
2,547,202	-				-1.8
2,547,202	-				-0.7
2,547,202	-				-0.0
2,547,202	-				-0.2
2,547,202	-				+0.1
2,547,296	-				-0.2
2,547,353	+				+2.0
2,547,353	+				-0.1
2,547,353	+				+1.0
2,547,354	-				-0.2
2,547,354	-				+0.5
2,547,354	-				-0.9
2,547,354	-				-0.4
2,547,354	-				-0.4
2,547,354	-				-0.4
2,547,354	-				+0.5
2,547,354	-				-0.1
2,547,354	-				+0.2
2,547,370	-				+0.9
2,547,753	+		GFF5541	0.32	+0.1
2,547,754	-		GFF5541	0.32	-0.3
2,547,754	-		GFF5541	0.32	+0.1
2,547,942	+		GFF5541	0.44	-0.1
2,547,943	-		GFF5541	0.44	+0.0
2,548,044	+		GFF5541	0.50	+0.4
2,548,044	+		GFF5541	0.50	+2.0
2,548,044	+		GFF5541	0.50	-0.4
2,548,045	-		GFF5541	0.50	+0.6
2,548,689	+				+0.2
2,548,689	+				-0.7
2,548,689	+				-0.4
2,548,690	-				+0.1
2,548,690	-				-0.9
2,548,859	+				-0.4
2,548,859	+				-0.3
2,548,859	+				+0.2
2,548,859	+				+0.0
2,548,859	+				-0.5
2,548,859	+				-0.2
2,548,859	+				-0.8
2,548,859	+				-0.4
2,548,859	+				+0.5
2,548,860	-				+0.6
2,548,860	-				+0.3
2,548,860	-				+0.1
2,548,900	+				-0.3
2,548,965	+				+0.2
2,548,966	-				-0.4
2,548,966	-				-0.3
2,549,066	+				-0.4
2,549,066	+				+0.5
2,549,066	+				+0.0
2,549,066	+				-1.0
2,549,066	+				+0.2
2,549,067	-				-1.0
2,549,067	-				-0.0
2,549,067	-				-0.0
2,549,205	+				+0.3
2,549,318	+				-0.1
2,549,353	-				+0.0
2,549,392	+				+0.3
2,549,392	+				+0.4
2,549,393	-				-1.0
2,549,393	-				-0.5
2,549,393	-				-0.8
2,549,393	-				-0.1
2,549,393	-				+0.0
2,549,401	-				+1.6
2,549,408	-				+0.4
2,549,433	-				+0.2
2,549,510	-				+0.2
2,549,673	-		GFF5542	0.28	+1.4
2,549,703	+		GFF5542	0.34	-1.2
2,549,703	+		GFF5542	0.34	-0.2
2,549,704	-		GFF5542	0.34	-1.1
2,549,704	-		GFF5542	0.34	-0.2
2,549,704	-		GFF5542	0.34	+0.5
2,549,704	-		GFF5542	0.34	-0.1
2,549,708	-		GFF5542	0.35	-1.2
2,549,708	-		GFF5542	0.35	-0.8