Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5478

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,479,172	+		GFF5476	0.71	+0.3
2,479,172	+		GFF5476	0.71	-0.2
2,479,173	-		GFF5476	0.71	-0.5
2,479,508	+				-1.3
2,479,509	-				-0.2
2,479,553	+				-0.5
2,479,836	+		GFF5477	0.68	+0.1
2,479,836	+		GFF5477	0.68	-0.8
2,479,837	-		GFF5477	0.68	+0.9
2,480,067	+		GFF5478	0.11	+0.1
2,480,067	+		GFF5478	0.11	-0.0
2,480,068	-		GFF5478	0.11	-0.1
2,480,172	+		GFF5478	0.22	+0.7
2,480,173	-		GFF5478	0.22	+0.1
2,480,476	-		GFF5478	0.53	+0.1
2,480,476	-		GFF5478	0.53	-0.0
2,480,623	-		GFF5478	0.69	-0.4
2,480,638	-		GFF5478	0.70	-0.8
2,480,673	+		GFF5478	0.74	+0.4
2,480,674	-		GFF5478	0.74	+0.5
2,481,230	+				-1.8
2,481,231	-				+0.1
2,481,231	-				+2.0
2,481,270	+				+0.1
2,481,322	+				-0.2
2,481,322	+				-0.2
2,481,323	-				+0.2
2,481,323	-				+0.1
2,481,323	-				+0.9
2,481,323	-				-1.8
2,481,323	-				-0.1
2,481,356	-				+0.4
2,481,473	-		GFF5480	0.33	-0.2
2,481,544	+		GFF5480	0.47	+0.2
2,481,544	+		GFF5480	0.47	+1.4
2,481,545	-		GFF5480	0.48	+0.5
2,481,545	-		GFF5480	0.48	-0.0
2,481,545	-		GFF5480	0.48	+0.1
2,481,547	+		GFF5480	0.48	-0.2
2,481,548	-		GFF5480	0.48	-1.2
2,481,548	-		GFF5480	0.48	+0.8
2,481,548	-		GFF5480	0.48	-0.1
2,481,670	+		GFF5480	0.73	+0.5
2,481,737	-		GFF5480	0.87	-0.1
2,481,746	-		GFF5480	0.89	+0.1
2,481,746	-		GFF5480	0.89	+0.0
2,481,746	-		GFF5480	0.89	+0.5
2,481,828	+				-0.1
2,481,834	+				+0.8
2,481,834	+				+0.1
2,481,834	+				-0.2
2,481,834	+				-0.2
2,481,834	+				-0.8
2,481,834	+				-0.1
2,481,835	-				-0.1
2,481,835	-				-0.5
2,481,835	-				-0.3
2,481,835	-				+0.0