Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5394

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,397,480	-		GFF5392	0.35	-0.1
2,397,480	-		GFF5392	0.35	-0.2
2,397,481	+		GFF5392	0.35	-0.2
2,397,481	+		GFF5392	0.35	+1.0
2,397,830	-		GFF5392	0.78	-0.2
2,398,048	-				-0.0
2,398,120	-				+0.8
2,398,120	-				-0.2
2,398,449	+				+1.1
2,398,449	+				-0.2
2,398,622	+		GFF5394	0.42	+1.1
2,398,640	+		GFF5394	0.47	+0.3
2,398,640	+		GFF5394	0.47	-0.3
2,398,670	+		GFF5394	0.55	+1.5
2,398,670	+		GFF5394	0.55	+1.0
2,398,671	-		GFF5394	0.55	-0.5
2,398,709	+		GFF5394	0.66	+0.8
2,398,969	+				-0.0
2,399,047	+				+0.5
2,399,057	-				-0.1
2,399,149	+		GFF5395	0.15	+0.4
2,399,281	+		GFF5395	0.23	-0.8
2,399,491	+		GFF5395	0.36	-0.1