Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5191

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,206,845	-		GFF5190	0.58	-0.3
2,206,886	+		GFF5190	0.61	-0.2
2,206,886	+		GFF5190	0.61	-0.1
2,206,886	+		GFF5190	0.61	-1.0
2,206,887	-		GFF5190	0.61	-1.3
2,206,887	-		GFF5190	0.61	-0.4
2,206,887	-		GFF5190	0.61	-0.0
2,206,904	+		GFF5190	0.62	+0.1
2,206,905	-		GFF5190	0.62	-0.7
2,206,905	-		GFF5190	0.62	+0.5
2,207,255	+		GFF5190	0.86	-0.4
2,207,261	+		GFF5190	0.86	+0.8
2,207,261	+		GFF5190	0.86	+0.0
2,207,262	-		GFF5190	0.86	-0.7
2,207,262	-		GFF5190	0.86	-0.3
2,207,420	+				-0.6
2,207,420	+				+0.1
2,207,421	-				-1.8
2,207,435	+				-0.3
2,207,435	+				-0.2
2,207,436	-				-0.2
2,207,436	-				-0.4
2,207,772	+		GFF5191	0.18	-0.9
2,207,772	+		GFF5191	0.18	+0.5
2,207,773	-		GFF5191	0.18	-0.5
2,208,114	+		GFF5191	0.39	+0.1
2,208,115	-		GFF5191	0.39	-0.5
2,208,115	-		GFF5191	0.39	-0.2
2,208,115	-		GFF5191	0.39	-0.6
2,208,396	+		GFF5191	0.56	-0.6
2,208,396	+		GFF5191	0.56	+0.0
2,208,396	+		GFF5191	0.56	-0.6
2,208,396	+		GFF5191	0.56	-0.2
2,208,397	-		GFF5191	0.56	-0.0
2,208,462	+		GFF5191	0.60	-0.5
2,208,547	-		GFF5191	0.66	-0.2
2,208,547	-		GFF5191	0.66	+2.2
2,208,601	-		GFF5191	0.69	-0.4
2,208,987	+				-1.0
2,209,048	-				-0.5
2,209,229	+				+0.8
2,209,229	+				-0.5
2,209,230	-				+0.7
2,209,661	+		GFF5192	0.46	-0.1
2,209,661	+		GFF5192	0.46	+0.4
2,209,661	+		GFF5192	0.46	-0.1
2,209,662	-		GFF5192	0.46	-0.2
2,209,662	-		GFF5192	0.46	-0.3
2,209,664	+		GFF5192	0.47	+0.0
2,209,664	+		GFF5192	0.47	+0.3
2,209,664	+		GFF5192	0.47	+0.3
2,209,664	+		GFF5192	0.47	-0.9
2,209,664	+		GFF5192	0.47	-0.2
2,209,664	+		GFF5192	0.47	-0.1
2,209,665	-		GFF5192	0.47	-0.5
2,209,665	-		GFF5192	0.47	+0.4
2,209,665	-		GFF5192	0.47	-0.5
2,209,665	-		GFF5192	0.47	+1.0
2,209,772	+		GFF5192	0.56	-0.1
2,209,773	-		GFF5192	0.56	-0.4
2,209,778	+		GFF5192	0.56	-0.5
2,209,778	+		GFF5192	0.56	-0.6
2,209,778	+		GFF5192	0.56	-1.0
2,209,778	+		GFF5192	0.56	+0.3
2,209,778	+		GFF5192	0.56	+0.4
2,209,779	-		GFF5192	0.56	+1.4
2,209,779	-		GFF5192	0.56	-0.6
2,209,779	-		GFF5192	0.56	+0.3
2,209,884	-		GFF5192	0.65	-0.3
2,209,920	-		GFF5192	0.68	+0.1