Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4942

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,960,931	-		GFF4941	0.84	+0.2
1,960,932	+		GFF4941	0.84	-0.5
1,960,932	+		GFF4941	0.84	+0.2
1,960,933	-		GFF4941	0.84	-0.1
1,960,933	-		GFF4941	0.84	-0.0
1,960,933	-		GFF4941	0.84	+0.8
1,960,933	-		GFF4941	0.84	+0.8
1,960,936	+		GFF4941	0.84	-0.1
1,960,936	+		GFF4941	0.84	-0.2
1,960,936	+		GFF4941	0.84	+0.4
1,960,937	-		GFF4941	0.84	+0.8
1,960,937	-		GFF4941	0.84	-0.4
1,960,937	-		GFF4941	0.84	-0.6
1,960,937	-		GFF4941	0.84	-0.1
1,960,942	+		GFF4941	0.84	+0.4
1,960,943	-		GFF4941	0.84	+0.9
1,961,119	+				-0.4
1,961,119	+				-0.8
1,961,291	-				+3.0
1,961,525	-		GFF4942	0.33	-0.5
1,961,539	+		GFF4942	0.34	+1.2
1,961,540	-		GFF4942	0.34	+1.1
1,961,540	-		GFF4942	0.34	-0.2
1,961,677	+		GFF4942	0.48	+0.3
1,961,678	-		GFF4942	0.48	+0.1
1,962,064	+		GFF4942	0.87	-2.0
1,962,065	-		GFF4942	0.88	+1.1
1,962,643	-				+1.1
1,962,914	-		GFF4944	0.23	-0.5
1,962,916	+		GFF4944	0.23	-0.7
1,962,916	+		GFF4944	0.23	-0.2
1,962,916	+		GFF4944	0.23	-1.1
1,962,916	+		GFF4944	0.23	-1.4
1,962,916	+		GFF4944	0.23	-0.9
1,962,917	-		GFF4944	0.24	-1.1
1,962,917	-		GFF4944	0.24	-0.4
1,962,917	-		GFF4944	0.24	-1.2
1,962,917	-		GFF4944	0.24	-1.8
1,962,917	-		GFF4944	0.24	-0.6
1,962,917	-		GFF4944	0.24	-0.8
1,962,940	+		GFF4944	0.27	-0.5
1,962,940	+		GFF4944	0.27	-1.6
1,962,940	+		GFF4944	0.27	-1.1
1,962,941	-		GFF4944	0.28	-0.8
1,962,941	-		GFF4944	0.28	-0.5
1,963,030	+		GFF4944	0.43	-1.0
1,963,030	+		GFF4944	0.43	-1.8
1,963,030	+		GFF4944	0.43	-1.2
1,963,030	+		GFF4944	0.43	-1.4
1,963,030	+		GFF4944	0.43	-1.0
1,963,030	+		GFF4944	0.43	+1.8
1,963,030	+		GFF4944	0.43	-0.9
1,963,031	-		GFF4944	0.43	-1.1
1,963,031	-		GFF4944	0.43	-2.1
1,963,031	-		GFF4944	0.43	-3.5