Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4734

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,689,230	+				-0.2
1,689,230	+				+0.2
1,689,302	+				+0.2
1,689,302	+				-0.3
1,689,311	+				+0.4
1,689,371	+				-0.1
1,689,828	+				-0.2
1,690,059	-				-0.3
1,690,125	+				+0.3
1,690,125	+				+0.4
1,690,345	+				-0.2
1,690,345	+				-0.7
1,690,345	+				+0.0
1,690,345	+				-0.6
1,690,345	+				-0.3
1,690,346	-				+0.4
1,690,346	-				+0.3
1,690,346	-				-0.2
1,690,346	-				+0.4
1,690,346	-				-0.2
1,690,346	-				-1.8
1,690,384	+				-0.5
1,690,385	-				-0.6
1,690,681	-		GFF4734	0.21	+1.8
1,691,032	+		GFF4734	0.35	+0.3
1,691,032	+		GFF4734	0.35	+0.4
1,691,144	-		GFF4734	0.39	+0.0
1,691,224	+		GFF4734	0.43	+0.2
1,691,224	+		GFF4734	0.43	-1.8
1,691,368	+		GFF4734	0.49	-0.2
1,691,369	-		GFF4734	0.49	-0.6
1,691,369	-		GFF4734	0.49	-0.1
1,691,419	+		GFF4734	0.51	+0.2
1,691,444	-		GFF4734	0.52	+0.0
1,691,444	-		GFF4734	0.52	-0.6
1,691,444	-		GFF4734	0.52	-0.1
1,691,473	+		GFF4734	0.53	-0.3
1,691,635	+		GFF4734	0.59	-0.1
1,691,824	+		GFF4734	0.67	-0.2
1,691,824	+		GFF4734	0.67	+0.7
1,691,825	-		GFF4734	0.67	-0.2
1,691,825	-		GFF4734	0.67	-0.8
1,691,825	-		GFF4734	0.67	-0.3
1,691,860	+		GFF4734	0.68	+0.2
1,691,861	-		GFF4734	0.69	-0.9
1,691,861	-		GFF4734	0.69	-0.3
1,691,869	+		GFF4734	0.69	+0.5
1,691,869	+		GFF4734	0.69	+0.4
1,691,869	+		GFF4734	0.69	-0.6
1,691,869	+		GFF4734	0.69	-0.4
1,691,869	+		GFF4734	0.69	+0.5
1,691,869	+		GFF4734	0.69	+0.1
1,691,870	-		GFF4734	0.69	+0.1
1,691,870	-		GFF4734	0.69	+0.1
1,691,870	-		GFF4734	0.69	+0.0
1,691,870	-		GFF4734	0.69	-0.7
1,691,870	-		GFF4734	0.69	+0.1
1,691,948	-		GFF4734	0.72	+0.5
1,691,950	+		GFF4734	0.72	+0.0
1,691,950	+		GFF4734	0.72	-0.4
1,692,067	+		GFF4734	0.77	-0.1
1,692,067	+		GFF4734	0.77	-0.2
1,692,103	+		GFF4734	0.78	+0.1
1,692,103	+		GFF4734	0.78	-0.7
1,692,104	-		GFF4734	0.78	-0.5
1,692,104	-		GFF4734	0.78	+0.8
1,692,104	-		GFF4734	0.78	+0.3
1,692,346	+		GFF4734	0.88	-0.2
1,692,415	+				+0.2
1,692,415	+				+0.4
1,692,415	+				+0.2
1,692,535	-				+1.3
1,692,556	+				+0.1
1,692,556	+				+0.1
1,692,599	-				-1.7
1,692,896	+		GFF4735	0.16	-0.1
1,692,896	+		GFF4735	0.16	+0.2
1,692,896	+		GFF4735	0.16	-0.8
1,692,897	-		GFF4735	0.16	-0.5
1,692,897	-		GFF4735	0.16	-1.2
1,692,932	+		GFF4735	0.20	-0.4
1,692,932	+		GFF4735	0.20	+0.0
1,692,932	+		GFF4735	0.20	-0.1
1,692,932	+		GFF4735	0.20	-0.5
1,693,140	-		GFF4735	0.40	-1.1
1,693,140	-		GFF4735	0.40	+1.5
1,693,214	+		GFF4735	0.47	-0.5
1,693,215	-		GFF4735	0.47	-0.2
1,693,274	+		GFF4735	0.53	+0.3
1,693,274	+		GFF4735	0.53	+0.1
1,693,275	-		GFF4735	0.53	+0.0
1,693,275	-		GFF4735	0.53	+0.5
1,693,428	-		GFF4735	0.68	+0.1
1,693,428	-		GFF4735	0.68	+0.5
1,693,574	+		GFF4735	0.83	+0.4
1,693,575	-		GFF4735	0.83	-0.6
1,693,575	-		GFF4735	0.83	-0.2
1,693,575	-		GFF4735	0.83	+0.8
1,693,601	+		GFF4735	0.85	+0.0
1,693,602	-		GFF4735	0.85	+0.7
1,693,602	-		GFF4735	0.85	+2.5