Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4691

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,641,436	+		GFF4689	0.88	+0.3
1,641,569	+				+0.8
1,641,570	-				+0.4
1,641,570	-				+1.8
1,641,570	-				-0.1
1,641,570	-				-0.3
1,641,778	+				+0.6
1,641,778	+				+0.2
1,641,823	+		GFF4690	0.21	-0.2
1,641,823	+		GFF4690	0.21	-0.1
1,641,823	+		GFF4690	0.21	+0.1
1,641,823	+		GFF4690	0.21	+0.8
1,641,824	-		GFF4690	0.21	+1.2
1,641,824	-		GFF4690	0.21	-1.2
1,642,033	-				+0.2
1,642,033	-				+0.0
1,642,125	+				-0.5
1,642,125	+				-0.7
1,642,125	+				-0.4
1,642,125	+				-0.4
1,642,126	-				-0.3
1,642,126	-				-0.1
1,642,126	-				+1.4
1,642,132	-				-1.1
1,642,183	-				-0.2
1,642,183	-				-0.3
1,642,183	-				+0.0
1,642,183	-				+0.3
1,642,400	+		GFF4691	0.19	-1.9
1,642,499	+		GFF4691	0.31	+0.2
1,642,550	+		GFF4691	0.37	-0.5
1,642,550	+		GFF4691	0.37	-0.3
1,642,550	+		GFF4691	0.37	-0.1
1,642,550	+		GFF4691	0.37	-0.2
1,642,551	-		GFF4691	0.37	-0.5
1,642,619	+		GFF4691	0.45	+0.1
1,642,619	+		GFF4691	0.45	+0.2
1,642,619	+		GFF4691	0.45	+0.9
1,642,620	-		GFF4691	0.45	-1.2
1,642,620	-		GFF4691	0.45	-0.4
1,642,620	-		GFF4691	0.45	-0.4
1,642,622	+		GFF4691	0.46	-0.3
1,642,622	+		GFF4691	0.46	-1.0
1,642,665	-		GFF4691	0.51	-0.6
1,642,730	+		GFF4691	0.59	+0.8
1,642,730	+		GFF4691	0.59	-0.4
1,642,730	+		GFF4691	0.59	-0.7
1,642,730	+		GFF4691	0.59	-1.8
1,642,730	+		GFF4691	0.59	-0.8
1,642,730	+		GFF4691	0.59	-0.6
1,642,731	-		GFF4691	0.59	+1.4
1,642,731	-		GFF4691	0.59	+1.0
1,642,775	+		GFF4691	0.64	-0.3
1,642,796	+		GFF4691	0.67	-1.6
1,642,925	+		GFF4691	0.82	-0.4
1,642,925	+		GFF4691	0.82	-0.6
1,642,925	+		GFF4691	0.82	-1.5
1,642,926	-		GFF4691	0.82	-0.4
1,642,926	-		GFF4691	0.82	+0.4
1,642,929	-		GFF4691	0.82	-1.8
1,642,929	-		GFF4691	0.82	-0.2
1,642,929	-		GFF4691	0.82	+0.5
1,643,045	+				-0.7
1,643,046	-				-0.0
1,643,046	-				-0.6
1,643,046	-				-0.3
1,643,046	-				-0.2
1,643,046	-				-0.2
1,643,046	-				-0.5
1,643,073	-				-0.0
1,643,073	-				-0.9
1,643,073	-				-0.4
1,643,237	+		GFF4692	0.22	+0.3
1,643,291	+		GFF4692	0.30	+0.2
1,643,292	-		GFF4692	0.30	-1.0
1,643,396	+		GFF4692	0.45	-1.5
1,643,405	+		GFF4692	0.46	+0.2
1,643,405	+		GFF4692	0.46	-0.2
1,643,405	+		GFF4692	0.46	-0.1
1,643,405	+		GFF4692	0.46	+0.2
1,643,618	+		GFF4692	0.77	-0.1
1,643,618	+		GFF4692	0.77	-0.2
1,643,618	+		GFF4692	0.77	+0.2
1,643,618	+		GFF4692	0.77	-0.4
1,643,618	+		GFF4692	0.77	-0.4
1,643,618	+		GFF4692	0.77	-0.8
1,643,618	+		GFF4692	0.77	+1.3
1,643,619	-		GFF4692	0.77	+0.2
1,643,619	-		GFF4692	0.77	+0.2
1,643,696	+		GFF4692	0.89	-0.8
1,643,696	+		GFF4692	0.89	+0.4
1,643,696	+		GFF4692	0.89	-0.9
1,643,697	-		GFF4692	0.89	+0.3
1,643,829	+				-1.4
1,643,829	+				-1.2
1,643,829	+				+0.4
1,643,829	+				-0.7
1,643,829	+				-0.9
1,643,830	-				+0.1
1,643,830	-				-0.2
1,643,959	-		GFF4693	0.24	-2.0
1,643,964	+		GFF4693	0.25	-0.6
1,643,964	+		GFF4693	0.25	-0.0
1,643,964	+		GFF4693	0.25	-1.0
1,643,964	+		GFF4693	0.25	+0.8
1,643,964	+		GFF4693	0.25	-1.2
1,643,965	-		GFF4693	0.25	-0.2
1,644,001	-		GFF4693	0.30	-0.1
1,644,001	-		GFF4693	0.30	-0.2
1,644,001	-		GFF4693	0.30	+0.5
1,644,001	-		GFF4693	0.30	-0.9
1,644,009	+		GFF4693	0.31	+0.6
1,644,009	+		GFF4693	0.31	-0.2
1,644,010	-		GFF4693	0.31	+0.3
1,644,012	+		GFF4693	0.32	-0.5
1,644,012	+		GFF4693	0.32	-0.4
1,644,012	+		GFF4693	0.32	-0.4
1,644,013	-		GFF4693	0.32	-0.0
1,644,013	-		GFF4693	0.32	+0.6