Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4578

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,519,677	+		GFF4577	0.29	+0.2
1,519,678	-		GFF4577	0.29	-0.7
1,519,678	-		GFF4577	0.29	-0.2
1,519,678	-		GFF4577	0.29	-1.0
1,519,678	-		GFF4577	0.29	+0.8
1,519,695	+		GFF4577	0.30	-0.1
1,519,695	+		GFF4577	0.30	+0.2
1,519,695	+		GFF4577	0.30	-1.3
1,519,696	-		GFF4577	0.30	-2.0
1,519,749	+		GFF4577	0.36	-0.3
1,519,750	-		GFF4577	0.36	-0.4
1,519,845	+		GFF4577	0.45	-0.4
1,519,846	-		GFF4577	0.45	-0.0
1,519,846	-		GFF4577	0.45	-0.3
1,520,101	-		GFF4577	0.70	-0.1
1,520,101	-		GFF4577	0.70	-0.0
1,520,274	+		GFF4577	0.87	-0.0
1,520,435	+				-0.9
1,520,435	+				+0.1
1,520,435	+				-0.3
1,520,435	+				-0.8
1,520,435	+				+0.4
1,520,435	+				+0.2
1,520,436	-				-0.2
1,520,436	-				+0.0
1,520,436	-				+0.7
1,520,436	-				-0.4
1,520,453	+				-1.2
1,520,453	+				-2.0
1,520,454	-				+0.0
1,521,003	-		GFF4578	0.65	-0.0
1,521,003	-		GFF4578	0.65	+0.8
1,521,065	+		GFF4578	0.72	-1.7
1,521,065	+		GFF4578	0.72	+1.1
1,521,065	+		GFF4578	0.72	+0.4
1,521,065	+		GFF4578	0.72	+0.1
1,521,066	-		GFF4578	0.72	+0.2
1,521,591	+		GFF4579	0.64	+0.6
1,521,592	+		GFF4579	0.64	+1.2
1,521,592	+		GFF4579	0.64	-0.6
1,521,592	+		GFF4579	0.64	+2.4
1,521,592	+		GFF4579	0.64	+0.1
1,521,593	-		GFF4579	0.64	+0.0
1,521,756	+				-0.1
1,521,757	-				-0.5
1,521,757	-				+0.2
1,521,757	-				+0.2
1,521,856	-				+0.0
1,522,248	+		GFF4580	0.34	+0.8
1,522,248	+		GFF4580	0.34	+0.1
1,522,248	+		GFF4580	0.34	-0.0
1,522,248	+		GFF4580	0.34	+1.1
1,522,249	-		GFF4580	0.34	+0.6
1,522,249	-		GFF4580	0.34	+0.1
1,522,249	-		GFF4580	0.34	+0.5
1,522,249	-		GFF4580	0.34	-0.4
1,522,249	-		GFF4580	0.34	-0.3
1,522,249	-		GFF4580	0.34	-0.4