Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4447

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,375,550	+				+0.8
1,375,893	-		GFF4445	0.87	+0.1
1,376,243	+		GFF4446	0.77	+1.2
1,376,244	-		GFF4446	0.77	+2.6
1,376,244	-		GFF4446	0.77	+0.5
1,376,314	+				-0.3
1,376,314	+				+0.0
1,376,314	+				+0.2
1,376,315	-				+0.1
1,376,315	-				+0.2
1,376,501	+		GFF4447	0.14	+0.3
1,376,501	+		GFF4447	0.14	+0.6
1,376,501	+		GFF4447	0.14	+1.5
1,376,625	+		GFF4447	0.28	+0.1
1,376,690	+		GFF4447	0.35	-0.0
1,376,814	+		GFF4447	0.49	+0.9
1,376,814	+		GFF4447	0.49	-0.2
1,376,814	+		GFF4447	0.49	+0.3
1,376,814	+		GFF4447	0.49	+1.1
1,376,814	+		GFF4447	0.49	-0.3
1,376,814	+		GFF4447	0.49	-0.1
1,376,815	-		GFF4447	0.49	-0.0
1,376,850	+		GFF4447	0.53	+0.3
1,376,866	-		GFF4447	0.55	+0.5
1,376,922	+		GFF4447	0.61	+0.4
1,377,432	+				-0.0
1,377,477	-				+0.2
1,377,543	-				-0.6
1,377,687	+		GFF4448	0.13	-0.4
1,377,687	+		GFF4448	0.13	-2.1
1,377,687	+		GFF4448	0.13	-0.3
1,377,687	+		GFF4448	0.13	-0.0
1,377,688	-		GFF4448	0.13	+0.1
1,377,688	-		GFF4448	0.13	+0.4
1,377,688	-		GFF4448	0.13	+0.8
1,377,688	-		GFF4448	0.13	+0.1
1,377,714	+		GFF4448	0.17	+0.1
1,377,714	+		GFF4448	0.17	-0.2
1,377,714	+		GFF4448	0.17	-1.9
1,377,714	+		GFF4448	0.17	+0.4
1,377,714	+		GFF4448	0.17	+0.1
1,377,715	-		GFF4448	0.17	-0.4
1,377,715	-		GFF4448	0.17	-0.7
1,377,715	-		GFF4448	0.17	-0.1
1,377,816	+		GFF4448	0.31	-1.0
1,377,816	+		GFF4448	0.31	-0.3
1,377,816	+		GFF4448	0.31	-0.4
1,377,817	-		GFF4448	0.31	-0.2
1,377,817	-		GFF4448	0.31	+0.2
1,377,870	+		GFF4448	0.38	-0.1
1,378,029	+		GFF4448	0.59	-0.0
1,378,030	-		GFF4448	0.60	-1.5